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The map label for this gene is yggS [C]

Identifier: 161869070

GI number: 161869070

Start: 53570

End: 54256

Strand: Direct

Name: yggS [C]

Synonym: NMCC_0053

Alternate gene names: 161869070

Gene position: 53570-54256 (Clockwise)

Preceding gene: 161869066

Following gene: 161869071

Centisome position: 2.49

GC content: 55.9

Gene sequence:

>687_bases
ATGACGGTGTTGCAAGAACGTTATTGTGAGGTGTCCGACCGTATCGGAAAATTGGTTCTGCAGGCGGGAAGGAAGCCGCA
TTCCGTCAGCCTGATTGCCGTCGGTAAGACTTTCCCTTCAGACGGCATCCGCGAAGTTTACGCCGCCGGACAGCGTGATT
TCGGCGAGAACTATATTCAGGAGTGGTACGGCAAAACGGAAGAGTTGGCGGATTTGACCGACATCGTGTGGCACGTCATC
GGCGATGTGCAGTCCAACAAAACCAAGTTTGTCGCCGAACGCGCGCATTGGGTGCATACCGTATGCCGTCTGAAAACCGC
TGTCCGGTTGAGCGAACAGCGTCCTTCCTCAATGCCGCCTTTGCAGGTGTGTATCGAGGTGAATATTGCGGGCGAGGCGG
CAAAGCACGGTGTTGCGCCCGAAGAAGCAGTCGCGCTTGCTGTGGAAGTGGCGAAGCTGCCGAATATCGTCGTACGCGGC
TTGATGTGTGTTGCCAAAGCCAACAGCAGTGAAACGGAGTTGAAGGTGCAATTTCAAACGATGCGGAAACTGCTTTCCGA
CCTCAATACGGCTGGCGTTAAGGCGGACGTGCTGTCTATGGGGATGTCGGACGATATGCCTGCCGCCATTGAGTGCGGTG
CGACACACGTCCGTATCGGCAGCGCGATTTTCGGGAAAAGGGGCTGA

Upstream 100 bases:

>100_bases
TAATGTTTCGATTGGTTGGAATGGTTCTAACAACCTTGATTGTACCGCCCTGACTGGAGGGGTTTCAACTGTTTAATCAT
TTTTAATTAGGGGATAATCT

Downstream 100 bases:

>100_bases
TGGAAATTCGGGCAATAAAATATACGGCAATGGCTGCGTTGCTTGCATTTACGGTTGCAGGCTGCCGGTTGGCAGGTTGG
TATGAGTGTTCGTCCCTGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MTVLQERYCEVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVI
GDVQSNKTKFVAERAHWVHTVCRLKTAVRLSEQRPSSMPPLQVCIEVNIAGEAAKHGVAPEEAVALAVEVAKLPNIVVRG
LMCVAKANSSETELKVQFQTMRKLLSDLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKRG

Sequences:

>Translated_228_residues
MTVLQERYCEVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVI
GDVQSNKTKFVAERAHWVHTVCRLKTAVRLSEQRPSSMPPLQVCIEVNIAGEAAKHGVAPEEAVALAVEVAKLPNIVVRG
LMCVAKANSSETELKVQFQTMRKLLSDLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKRG
>Mature_227_residues
TVLQERYCEVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIG
DVQSNKTKFVAERAHWVHTVCRLKTAVRLSEQRPSSMPPLQVCIEVNIAGEAAKHGVAPEEAVALAVEVAKLPNIVVRGL
MCVAKANSSETELKVQFQTMRKLLSDLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKRG

Specific function: Perhaps involved in proline biosynthesis [H]

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=235, Percent_Identity=36.1702127659575, Blast_Score=122, Evalue=3e-28,
Organism=Escherichia coli, GI1789321, Length=232, Percent_Identity=43.9655172413793, Blast_Score=195, Evalue=2e-51,
Organism=Caenorhabditis elegans, GI17533025, Length=208, Percent_Identity=37.9807692307692, Blast_Score=108, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6319435, Length=209, Percent_Identity=33.9712918660287, Blast_Score=101, Evalue=1e-22,
Organism=Drosophila melanogaster, GI45550861, Length=235, Percent_Identity=34.8936170212766, Blast_Score=127, Evalue=5e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24874; Mature: 24743

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVLQERYCEVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ
CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHH
EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSEQRPSSMPP
HHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
LQVCIEVNIAGEAAKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT
EEEEEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEHHHH
MRKLLSDLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKRG
HHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHCCCCCEEECHHHHCCCC
>Mature Secondary Structure 
TVLQERYCEVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHH
EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSEQRPSSMPP
HHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
LQVCIEVNIAGEAAKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT
EEEEEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEHHHH
MRKLLSDLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKRG
HHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHCCCCCEEECHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1676385; 10984043; 2107123 [H]