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The map label for this gene is rbfA [H]

Identifier: 161723141

GI number: 161723141

Start: 2926230

End: 2926598

Strand: Reverse

Name: rbfA [H]

Synonym: BTH_I2563

Alternate gene names: 161723141

Gene position: 2926598-2926230 (Counterclockwise)

Preceding gene: 83718907

Following gene: 83721451

Centisome position: 76.83

GC content: 61.79

Gene sequence:

>369_bases
ATGTCGAAAAAACGCAGTTCACCCAATCGCAACGTGCAGATCGCCGATCAGATCCAGCGGGATCTGTCTGAGCTCATCAT
GCGCGAGGTCAAGGACCCGCGCATCGGGATCGTGACGATCCAGTCGGTCGAGCTCACGCCCGACTACGCGCACGCCAAGG
TCTACTTCACCGCGCTCACGGGCAATCCCGCGGACACGCAGGAAGCGCTCAACCATGCGGCCGGCCACTTGCACAATCTG
CTCTTCAAGCGCCTGCACATTCACACGGTGCCGACGCTGCATTTCCACTACGACCAGACGATCGAGAAGGCCGTCGCGAT
GTCGCGCCTCATCGACGAGGCGAACGCGACGCGCGCGAAGGACGACTGA

Upstream 100 bases:

>100_bases
GCGTGACGGCTTGAATGGGCGGGTCGGGCTTGGGCCCGTCCCGCCCATTTTCATGAATGGTGTCGCGCGCCTTGCCGATC
AACCGGATGACGGATTTATC

Downstream 100 bases:

>100_bases
CCAACGAACGAGCCTTGGCGCAGACCATGACGACTGTTTCGCCCCGCCCCCGGATGGCTCGCCGCGCGCTCGACGGCGTG
CTGCTGCTCGACAAGCCGGT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 121

Protein sequence:

>122_residues
MSKKRSSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTALTGNPADTQEALNHAAGHLHNL
LFKRLHIHTVPTLHFHYDQTIEKAVAMSRLIDEANATRAKDD

Sequences:

>Translated_122_residues
MSKKRSSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTALTGNPADTQEALNHAAGHLHNL
LFKRLHIHTVPTLHFHYDQTIEKAVAMSRLIDEANATRAKDD
>Mature_121_residues
SKKRSSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTALTGNPADTQEALNHAAGHLHNLL
FKRLHIHTVPTLHFHYDQTIEKAVAMSRLIDEANATRAKDD

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=116, Percent_Identity=35.3448275862069, Blast_Score=80, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13821; Mature: 13690

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKRSSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTALT
CCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEC
GNPADTQEALNHAAGHLHNLLFKRLHIHTVPTLHFHYDQTIEKAVAMSRLIDEANATRAK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCC
DD
CC
>Mature Secondary Structure 
SKKRSSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTALT
CCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEC
GNPADTQEALNHAAGHLHNLLFKRLHIHTVPTLHFHYDQTIEKAVAMSRLIDEANATRAK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCC
DD
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA