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The map label for this gene is rpmB

Identifier: 161702940

GI number: 161702940

Start: 4045212

End: 4045457

Strand: Direct

Name: rpmB

Synonym: gvip514

Alternate gene names: 161702940

Gene position: 4045212-4045457 (Clockwise)

Preceding gene: 37523404

Following gene: 37523410

Centisome position: 86.83

GC content: 53.25

Gene sequence:

>246_bases
ATGTCGCGCAAGTGCATGCTCACCGGCAAAAAAGCCAACAACGCCTACAGCGTTTCTTTTTCCCACCGCCGCAACAAGCG
TTTGCAGATGGCCAACTTGCAATGGAAGCGGATCTGGGACGATCAGCAGGGTTGCTTCGTGCGCTTGAAGCTCTCGACCA
AAGCGATCAAGACCCTTGAGCACCGCAGCCTGCACGCTTTGGCCAAAGAAGCGGGTCTGGATCTAAGCAAATACGTTGTG
AAATAA

Upstream 100 bases:

>100_bases
ATCTATTGTAACGTTGAGCCCATCGGCCACGACACCCGTGCGGCGAACCCTCCTGGTGTGTAATAATTAGCGATTGTGTT
CAAAATCCGGAGTGCGGACG

Downstream 100 bases:

>100_bases
ATCAAGGCTTACGATTGCGCGCCGCACCGGTTAGATAAGCTGCCAGTGGCGCAATCCTTCGGCGATGCCTTCAGCACAGC
GGCCCTTCGCAGCGTAGATA

Product: 50S ribosomal protein L28

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 81; Mature: 80

Protein sequence:

>81_residues
MSRKCMLTGKKANNAYSVSFSHRRNKRLQMANLQWKRIWDDQQGCFVRLKLSTKAIKTLEHRSLHALAKEAGLDLSKYVV
K

Sequences:

>Translated_81_residues
MSRKCMLTGKKANNAYSVSFSHRRNKRLQMANLQWKRIWDDQQGCFVRLKLSTKAIKTLEHRSLHALAKEAGLDLSKYVV
K
>Mature_80_residues
SRKCMLTGKKANNAYSVSFSHRRNKRLQMANLQWKRIWDDQQGCFVRLKLSTKAIKTLEHRSLHALAKEAGLDLSKYVVK

Specific function: Unknown

COG id: COG0227

COG function: function code J; Ribosomal protein L28

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L28P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL28_GLOVI (Q7NEP1)

Other databases:

- EMBL:   BA000045
- RefSeq:   NP_926784.2
- ProteinModelPortal:   Q7NEP1
- SMR:   Q7NEP1
- GeneID:   2602241
- GenomeReviews:   BA000045_GR
- NMPDR:   fig|251221.1.peg.3838
- HOGENOM:   HBG597003
- ProtClustDB:   PRK00359
- BioCyc:   GVIO251221:GSR3838-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00373
- InterPro:   IPR001383
- TIGRFAMs:   TIGR00009

Pfam domain/function: PF00830 Ribosomal_L28

EC number: NA

Molecular weight: Translated: 9434; Mature: 9303

Theoretical pI: Translated: 11.19; Mature: 11.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRKCMLTGKKANNAYSVSFSHRRNKRLQMANLQWKRIWDDQQGCFVRLKLSTKAIKTLE
CCCCEEEECCCCCCEEEEEECCCCCCEEEECCCEEEEECCCCCCCEEEEEECHHHHHHHH
HRSLHALAKEAGLDLSKYVVK
HHHHHHHHHHHCCCHHHHHCC
>Mature Secondary Structure 
SRKCMLTGKKANNAYSVSFSHRRNKRLQMANLQWKRIWDDQQGCFVRLKLSTKAIKTLE
CCCEEEECCCCCCEEEEEECCCCCCEEEECCCEEEEECCCCCCCEEEEEECHHHHHHHH
HRSLHALAKEAGLDLSKYVVK
HHHHHHHHHHHCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14621292