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The map label for this gene is yqhC [H]

Identifier: 161526269

GI number: 161526269

Start: 3385292

End: 3386179

Strand: Reverse

Name: yqhC [H]

Synonym: Bmul_3100

Alternate gene names: 161526269

Gene position: 3386179-3385292 (Counterclockwise)

Preceding gene: 161526271

Following gene: 161526260

Centisome position: 98.19

GC content: 70.38

Gene sequence:

>888_bases
ATGAGTTTCCAGCCCCTTTTTGCCGATTCGGCCGACCGTGTGCGGCGCCGCATGATCGAGCTGCATACGCGTCTCGCGCC
GGACGAGGGCGACACGCCGGCCGCGATCGACGGCGTGCGCTTCATCCGCGTGAGCCGTCCGGCGCCGCGCTTGCCGGTGC
TCTACGAGCCGAGCATCGTCGTCGTCTGTCAGGGTCGCAAGCTCGGTTATCTCGGCGAGCGCTCGTTCGTCTACGACGCG
CAGCAGTACCTCGCGATCTCGATCCGCGTCGATCTCGCCGTGATCGCCGAGCTCGCGATCCTGCTCGACGAGACGCTCGG
CGCGGCCGTCAGCGAACCGCACGGCGTCTATTCGACGCCGCTCGACGCGCCGCTCGCGGACGCGGTGCTGCGGCTGCTCG
AGACGCTCGCGTCGCCGCACGACACGCGCGTGCTCGGGCCGTCGATCATGCGCGAGATCGCGTATCGCGTGCTGACCGGC
GCGCAGGGCGACGCGATTCGCGCGGCGCTCGTCCAGCAGCATCACTTCGGCCGGATCGCGAAGGCGCTGCGGCGCATTCA
TGCGGACCTGCAGGCCGACCTCGACGTCGAGACGCTCGCCCGCGAGGCCGGAATGAGCCTCGCGGTGTTCCATGCGCAGT
TCAAGCACGTGACGGCGACGTCGCCGATGCAGTACGTGAAGACCGCGCGGCTGCATCAGGCGCGGCTGATGATGGTGCAG
AACGGTCTGGGCGCGGGCGCCGCGGCCGCGCGCGTCGGCTATGCGAGTGCGTCGCAGTTCAGCCGCGAGTTCAAGCGGCT
GTTTGGCCGCAGCCCCGGCGACGAGGTGCGCGCGATGCGCGACAGCAGCGATCGCACGGCTGGCGCGGTCGCCGCGGCGC
AGCGATAG

Upstream 100 bases:

>100_bases
CCTTTGCCTATTCCTCTTGAATTTCTCGCGAAAGGCCGTCGAAACGCCGGCACGGTGCTAAATTGCGAGCCAGATTCTCT
TGCAGTACAGGAACTTGCCG

Downstream 100 bases:

>100_bases
GCGCGCGCGCCGCTCAGCGCCGCACGACCTTGCGCCGCTGCGCGCTGATGCCCGCGTAGTCGGGCAGCGCATCGACGCGC
TTGCCGATCGCCTTCGCGTA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MSFQPLFADSADRVRRRMIELHTRLAPDEGDTPAAIDGVRFIRVSRPAPRLPVLYEPSIVVVCQGRKLGYLGERSFVYDA
QQYLAISIRVDLAVIAELAILLDETLGAAVSEPHGVYSTPLDAPLADAVLRLLETLASPHDTRVLGPSIMREIAYRVLTG
AQGDAIRAALVQQHHFGRIAKALRRIHADLQADLDVETLAREAGMSLAVFHAQFKHVTATSPMQYVKTARLHQARLMMVQ
NGLGAGAAAARVGYASASQFSREFKRLFGRSPGDEVRAMRDSSDRTAGAVAAAQR

Sequences:

>Translated_295_residues
MSFQPLFADSADRVRRRMIELHTRLAPDEGDTPAAIDGVRFIRVSRPAPRLPVLYEPSIVVVCQGRKLGYLGERSFVYDA
QQYLAISIRVDLAVIAELAILLDETLGAAVSEPHGVYSTPLDAPLADAVLRLLETLASPHDTRVLGPSIMREIAYRVLTG
AQGDAIRAALVQQHHFGRIAKALRRIHADLQADLDVETLAREAGMSLAVFHAQFKHVTATSPMQYVKTARLHQARLMMVQ
NGLGAGAAAARVGYASASQFSREFKRLFGRSPGDEVRAMRDSSDRTAGAVAAAQR
>Mature_294_residues
SFQPLFADSADRVRRRMIELHTRLAPDEGDTPAAIDGVRFIRVSRPAPRLPVLYEPSIVVVCQGRKLGYLGERSFVYDAQ
QYLAISIRVDLAVIAELAILLDETLGAAVSEPHGVYSTPLDAPLADAVLRLLETLASPHDTRVLGPSIMREIAYRVLTGA
QGDAIRAALVQQHHFGRIAKALRRIHADLQADLDVETLAREAGMSLAVFHAQFKHVTATSPMQYVKTARLHQARLMMVQN
GLGAGAAAARVGYASASQFSREFKRLFGRSPGDEVRAMRDSSDRTAGAVAAAQR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=281, Percent_Identity=40.5693950177936, Blast_Score=210, Evalue=1e-55,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32175; Mature: 32044

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFQPLFADSADRVRRRMIELHTRLAPDEGDTPAAIDGVRFIRVSRPAPRLPVLYEPSIV
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHCCEEEEEECCCCCCCCEEECCCEE
VVCQGRKLGYLGERSFVYDAQQYLAISIRVDLAVIAELAILLDETLGAAVSEPHGVYSTP
EEECCCCCCCCCCCHHHHCHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
LDAPLADAVLRLLETLASPHDTRVLGPSIMREIAYRVLTGAQGDAIRAALVQQHHFGRIA
CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
KALRRIHADLQADLDVETLAREAGMSLAVFHAQFKHVTATSPMQYVKTARLHQARLMMVQ
HHHHHHHHHHHCCCCHHHHHHHHCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
NGLGAGAAAARVGYASASQFSREFKRLFGRSPGDEVRAMRDSSDRTAGAVAAAQR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHCCC
>Mature Secondary Structure 
SFQPLFADSADRVRRRMIELHTRLAPDEGDTPAAIDGVRFIRVSRPAPRLPVLYEPSIV
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHCCEEEEEECCCCCCCCEEECCCEE
VVCQGRKLGYLGERSFVYDAQQYLAISIRVDLAVIAELAILLDETLGAAVSEPHGVYSTP
EEECCCCCCCCCCCHHHHCHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
LDAPLADAVLRLLETLASPHDTRVLGPSIMREIAYRVLTGAQGDAIRAALVQQHHFGRIA
CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
KALRRIHADLQADLDVETLAREAGMSLAVFHAQFKHVTATSPMQYVKTARLHQARLMMVQ
HHHHHHHHHHHCCCCHHHHHHHHCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
NGLGAGAAAARVGYASASQFSREFKRLFGRSPGDEVRAMRDSSDRTAGAVAAAQR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]