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The map label for this gene is dapF [H]

Identifier: 161526249

GI number: 161526249

Start: 3363006

End: 3364169

Strand: Direct

Name: dapF [H]

Synonym: Bmul_3080

Alternate gene names: 161526249

Gene position: 3363006-3364169 (Clockwise)

Preceding gene: 161526248

Following gene: 161526250

Centisome position: 97.52

GC content: 70.36

Gene sequence:

>1164_bases
ATGCGTGCGTCGCCCGGCCCATGCCGCGAACTTCGTCCGCCGCGCGCGTGCGTGCCATGCCGCGCCGGGTCAATCTGCGC
CGTCGTCGCGCGCGCAACCAGTCGGCCAATCGGCCGAATCGGCGTGCGTTCATGCCCGCGGCCCGACGCGAAGCGCCCGT
CCGGGCGGGACGCCCCGGTCCGCTGCATGTATCATTTGCGGTTGAGATCGGCCCGACGAACGGCGCCGCGCGATAGCGCG
CGTCGTCGCCCGCGCGGTGCCGACCGCCTCGATCGCCATGGAATTCCGGACCCAGTGAAACTCTCGTTCACCAAGATGCA
CGGCGCGGGCAACGACTTCGTCGTGCTCGACGGCTATTCGCGCACGCTGCCGCCGCTCACCGCCGCGCAGGTGCGCGCGC
TCGCCAGCCGCCACTTCGGCATCGGCGCCGACCAGCTGCTGCTCGTCGAGAAGCCGACCGTCGACGGCGCCGACTTCAAG
TACCGGATCTTCAACTGCGACGGCGGCGAAGTCGAACACTGCGGCAACGGCGCGCGCTGCTTCGTGAAATTCGTCAGCGA
TCGCGGCCTCACCGACAAGCGCAGCGTGCGCGTGCAGGTGATGAAGGGCCTCATCACGCTGACGATGCAGGACAACGGCG
AAGTGGTCGTCGACATGGGCGCGCCCGTGTTCGCGCCCGAACAGGTGCCGTTCGACGCGTCGGGCCTCGACGGCCGCAGC
GAAGGCCGCGACACGCTGTGGCCGCTCGAGGTCGGCGGCCGCACGCGCTGGATCTCGACGGTCTCGATGGGCAATCCGCA
TGCGGTACAGGTCGTCGACGATGCCGAAGCGTATCCGGTGCTCGAGGAAGGCCCGCTGATCGAGCGCCACGCGCGCTTTC
CGCAGCGCGTGAATGCCGGCTTCATGCAGATCGTGTCGCGCAGCGAGGTGAAGCTGCGCGTCTACGAACGCGGCGCAGGC
GAAACGCTCGCATGCGGCACCGGCGCATGCGCGGCCGTCGCGGCCGGCATCCGGCGCGGGCTGCTCGATTCGCCGGTCAC
CGTGCACACGCACGGCGGCACGCTGACGATCGGCTGGGACGGCGCACGCGACGAATCGGCCGCGCTGATGATGGCCGGCC
CCGCGGCGACCGTGTTCGAAGGCGAGATCGACCTGCCCGCCTGA

Upstream 100 bases:

>100_bases
GGGTGACCGCATGGGCTGCACGGTGTATGGCCACACCATACGAATCGCGTGATCGGGTCGTCAATTTGACCGGTACGAAA
ACACGCGCGCTGGTTTGTGC

Downstream 100 bases:

>100_bases
CCTTTCAACGTCCGATAACCCGAAGAACGCGCCAGTCACATGAACGATCGCGAAGTCGCCGACTACCTGCTCGCCAACCC
CGAATTCTTCGCGCGGCACG

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MRASPGPCRELRPPRACVPCRAGSICAVVARATSRPIGRIGVRSCPRPDAKRPSGRDAPVRCMYHLRLRSARRTAPRDSA
RRRPRGADRLDRHGIPDPVKLSFTKMHGAGNDFVVLDGYSRTLPPLTAAQVRALASRHFGIGADQLLLVEKPTVDGADFK
YRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVDMGAPVFAPEQVPFDASGLDGRS
EGRDTLWPLEVGGRTRWISTVSMGNPHAVQVVDDAEAYPVLEEGPLIERHARFPQRVNAGFMQIVSRSEVKLRVYERGAG
ETLACGTGACAAVAAGIRRGLLDSPVTVHTHGGTLTIGWDGARDESAALMMAGPAATVFEGEIDLPA

Sequences:

>Translated_387_residues
MRASPGPCRELRPPRACVPCRAGSICAVVARATSRPIGRIGVRSCPRPDAKRPSGRDAPVRCMYHLRLRSARRTAPRDSA
RRRPRGADRLDRHGIPDPVKLSFTKMHGAGNDFVVLDGYSRTLPPLTAAQVRALASRHFGIGADQLLLVEKPTVDGADFK
YRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVDMGAPVFAPEQVPFDASGLDGRS
EGRDTLWPLEVGGRTRWISTVSMGNPHAVQVVDDAEAYPVLEEGPLIERHARFPQRVNAGFMQIVSRSEVKLRVYERGAG
ETLACGTGACAAVAAGIRRGLLDSPVTVHTHGGTLTIGWDGARDESAALMMAGPAATVFEGEIDLPA
>Mature_387_residues
MRASPGPCRELRPPRACVPCRAGSICAVVARATSRPIGRIGVRSCPRPDAKRPSGRDAPVRCMYHLRLRSARRTAPRDSA
RRRPRGADRLDRHGIPDPVKLSFTKMHGAGNDFVVLDGYSRTLPPLTAAQVRALASRHFGIGADQLLLVEKPTVDGADFK
YRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVDMGAPVFAPEQVPFDASGLDGRS
EGRDTLWPLEVGGRTRWISTVSMGNPHAVQVVDDAEAYPVLEEGPLIERHARFPQRVNAGFMQIVSRSEVKLRVYERGAG
ETLACGTGACAAVAAGIRRGLLDSPVTVHTHGGTLTIGWDGARDESAALMMAGPAATVFEGEIDLPA

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082334, Length=285, Percent_Identity=48.7719298245614, Blast_Score=263, Evalue=1e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 41734; Mature: 41734

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRASPGPCRELRPPRACVPCRAGSICAVVARATSRPIGRIGVRSCPRPDAKRPSGRDAPV
CCCCCCCHHHCCCCCCCCCCCCCCCEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH
RCMYHLRLRSARRTAPRDSARRRPRGADRLDRHGIPDPVKLSFTKMHGAGNDFVVLDGYS
EEHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHCCCCCCCEEEEEEECCCCCCEEEECCCC
RTLPPLTAAQVRALASRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARC
CCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCHHHCCCCCEE
FVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVDMGAPVFAPEQVPFDASGLDGRS
EEEEECCCCCCCHHHHHHEEEECEEEEEEECCCCEEEECCCCEECCCCCCCCCCCCCCCC
EGRDTLWPLEVGGRTRWISTVSMGNPHAVQVVDDAEAYPVLEEGPLIERHARFPQRVNAG
CCCCCEEEEEECCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHCCHHHHCHH
FMQIVSRSEVKLRVYERGAGETLACGTGACAAVAAGIRRGLLDSPVTVHTHGGTLTIGWD
HHHHHCCCCEEEEEEECCCCCEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCEEEEECC
GARDESAALMMAGPAATVFEGEIDLPA
CCCCCCCEEEEECCCCEEEECCCCCCC
>Mature Secondary Structure
MRASPGPCRELRPPRACVPCRAGSICAVVARATSRPIGRIGVRSCPRPDAKRPSGRDAPV
CCCCCCCHHHCCCCCCCCCCCCCCCEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH
RCMYHLRLRSARRTAPRDSARRRPRGADRLDRHGIPDPVKLSFTKMHGAGNDFVVLDGYS
EEHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHCCCCCCCEEEEEEECCCCCCEEEECCCC
RTLPPLTAAQVRALASRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARC
CCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCHHHCCCCCEE
FVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVDMGAPVFAPEQVPFDASGLDGRS
EEEEECCCCCCCHHHHHHEEEECEEEEEEECCCCEEEECCCCEECCCCCCCCCCCCCCCC
EGRDTLWPLEVGGRTRWISTVSMGNPHAVQVVDDAEAYPVLEEGPLIERHARFPQRVNAG
CCCCCEEEEEECCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHCCHHHHCHH
FMQIVSRSEVKLRVYERGAGETLACGTGACAAVAAGIRRGLLDSPVTVHTHGGTLTIGWD
HHHHHCCCCEEEEEEECCCCCEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCEEEEECC
GARDESAALMMAGPAATVFEGEIDLPA
CCCCCCCEEEEECCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA