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The map label for this gene is dppB [H]

Identifier: 161526208

GI number: 161526208

Start: 3321507

End: 3322517

Strand: Reverse

Name: dppB [H]

Synonym: Bmul_3039

Alternate gene names: 161526208

Gene position: 3322517-3321507 (Counterclockwise)

Preceding gene: 161526209

Following gene: 161526207

Centisome position: 96.35

GC content: 66.17

Gene sequence:

>1011_bases
ATGCTCCGATTCGTGTTGCGCCGCGTGGGCATGGTGATTCCGACCTTCATCGGCATCACCATCCTCGCGTTCGCGCTGAT
TCACCTGATACCGGGCGACCCCATCGAAGTGATGATGGGCGAGCGCGGCGTCGACCCCGCGATGCACGCGGAGGCGATGA
AACGCCTCGGGCTCGACCAGCCGCTGCCCGTGCAATATTTCCACTACATCGGCCGGGCGCTGCACGGCGACCTCGGCACG
TCGATCGTCACGAACACGAGCGTCGCAGGCGAGTTCTTCGCGCGCTTTCCCGCGACCGTCGAACTGTCGCTGTGCGCGCT
CGTGTTCGCGCTCGTCGTCGGGCTGCCGGCTGGCGTGATCGCCGCGCTGCGGCGCGGCTCGATCGTCGATCACGGCGTGA
TGGGCACCGCGCTGACCGGCTATTCGATGCCGATCTTCTGGTGGGGATTGATCCTCATCATGGTGTTTTCGTCGTATCTC
GGCTGGACGCCCGTGTCGGGCCGCATCGCGGTCGAATACGACTTCCCGCATCCGACCGGCTTCATGCTGATCGACGCGCT
GCTCGCGCCGGACGAAGGGTCGTTCAAGTCGGCGGTCAGCCACCTGATCCTGCCCGCGATCGTGCTCGGCACGATTCCGC
TCGCCGTGATCGCGCGGATGACGCGCTCGTCGATGCTCGAAGTGCTGCGCGAGGATTACATCCGCACCGCGCGCGCGAAG
GGGCTGTCGCCGGCGCGCGTGGTCGTCGTGCATGCGCTGCGCAACGCGCTGATTCCGGTCGTCACCGTGATCGGCCTGCA
GATCGGCACGCTGCTTGCGGGCGCGGTGCTGACCGAGACGCTGTTTTCGTGGCCCGGCGTCGGCAAGTGGCTGATCGATG
CGATCGGCCGTCGCGACTATCCGGTCGTCCAGGGCGGCATTCTGCTGATCGCGACGCTCGTGATCGTCGTGAACCTGATC
GTCGACCTGCTGTACGGCGTGCTGAATCCGCGCATCCGCCACACGAGGTAA

Upstream 100 bases:

>100_bases
AAGCTGTCACGAAGACCGAGACCTACCCATCCGGCGGCGGGGGGCCACGAGCTCCCCGTCGCCGGTCGCACATTTCCCAC
AAGAAAAGACGAGACGCATC

Downstream 100 bases:

>100_bases
TCCATGAGCAATCTGCAAAACACCCTGCCGAGCGAATCCGCGCCGGCCGGCGGCCGTGCGCTCGCGCTGCGCGAGTTCTG
GGCCAACTTCTCGCGCAACC

Product: nickel-transporting ATPase

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MLRFVLRRVGMVIPTFIGITILAFALIHLIPGDPIEVMMGERGVDPAMHAEAMKRLGLDQPLPVQYFHYIGRALHGDLGT
SIVTNTSVAGEFFARFPATVELSLCALVFALVVGLPAGVIAALRRGSIVDHGVMGTALTGYSMPIFWWGLILIMVFSSYL
GWTPVSGRIAVEYDFPHPTGFMLIDALLAPDEGSFKSAVSHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTARAK
GLSPARVVVVHALRNALIPVVTVIGLQIGTLLAGAVLTETLFSWPGVGKWLIDAIGRRDYPVVQGGILLIATLVIVVNLI
VDLLYGVLNPRIRHTR

Sequences:

>Translated_336_residues
MLRFVLRRVGMVIPTFIGITILAFALIHLIPGDPIEVMMGERGVDPAMHAEAMKRLGLDQPLPVQYFHYIGRALHGDLGT
SIVTNTSVAGEFFARFPATVELSLCALVFALVVGLPAGVIAALRRGSIVDHGVMGTALTGYSMPIFWWGLILIMVFSSYL
GWTPVSGRIAVEYDFPHPTGFMLIDALLAPDEGSFKSAVSHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTARAK
GLSPARVVVVHALRNALIPVVTVIGLQIGTLLAGAVLTETLFSWPGVGKWLIDAIGRRDYPVVQGGILLIATLVIVVNLI
VDLLYGVLNPRIRHTR
>Mature_336_residues
MLRFVLRRVGMVIPTFIGITILAFALIHLIPGDPIEVMMGERGVDPAMHAEAMKRLGLDQPLPVQYFHYIGRALHGDLGT
SIVTNTSVAGEFFARFPATVELSLCALVFALVVGLPAGVIAALRRGSIVDHGVMGTALTGYSMPIFWWGLILIMVFSSYL
GWTPVSGRIAVEYDFPHPTGFMLIDALLAPDEGSFKSAVSHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTARAK
GLSPARVVVVHALRNALIPVVTVIGLQIGTLLAGAVLTETLFSWPGVGKWLIDAIGRRDYPVVQGGILLIATLVIVVNLI
VDLLYGVLNPRIRHTR

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=339, Percent_Identity=65.7817109144543, Blast_Score=456, Evalue=1e-129,
Organism=Escherichia coli, GI1787053, Length=335, Percent_Identity=41.7910447761194, Blast_Score=262, Evalue=2e-71,
Organism=Escherichia coli, GI1787761, Length=289, Percent_Identity=48.4429065743945, Blast_Score=241, Evalue=5e-65,
Organism=Escherichia coli, GI1789888, Length=336, Percent_Identity=37.5, Blast_Score=216, Evalue=1e-57,
Organism=Escherichia coli, GI1787550, Length=274, Percent_Identity=39.7810218978102, Blast_Score=207, Evalue=6e-55,
Organism=Escherichia coli, GI1787497, Length=335, Percent_Identity=35.5223880597015, Blast_Score=201, Evalue=7e-53,
Organism=Escherichia coli, GI1788504, Length=369, Percent_Identity=25.4742547425474, Blast_Score=134, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36383; Mature: 36383

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRFVLRRVGMVIPTFIGITILAFALIHLIPGDPIEVMMGERGVDPAMHAEAMKRLGLDQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHCCCCC
PLPVQYFHYIGRALHGDLGTSIVTNTSVAGEFFARFPATVELSLCALVFALVVGLPAGVI
CCCHHHHHHHHHHHHCHHCCHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHH
AALRRGSIVDHGVMGTALTGYSMPIFWWGLILIMVFSSYLGWTPVSGRIAVEYDFPHPTG
HHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCH
FMLIDALLAPDEGSFKSAVSHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTARAK
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLSPARVVVVHALRNALIPVVTVIGLQIGTLLAGAVLTETLFSWPGVGKWLIDAIGRRDY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC
PVVQGGILLIATLVIVVNLIVDLLYGVLNPRIRHTR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLRFVLRRVGMVIPTFIGITILAFALIHLIPGDPIEVMMGERGVDPAMHAEAMKRLGLDQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHCCCCC
PLPVQYFHYIGRALHGDLGTSIVTNTSVAGEFFARFPATVELSLCALVFALVVGLPAGVI
CCCHHHHHHHHHHHHCHHCCHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHH
AALRRGSIVDHGVMGTALTGYSMPIFWWGLILIMVFSSYLGWTPVSGRIAVEYDFPHPTG
HHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCH
FMLIDALLAPDEGSFKSAVSHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTARAK
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLSPARVVVVHALRNALIPVVTVIGLQIGTLLAGAVLTETLFSWPGVGKWLIDAIGRRDY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC
PVVQGGILLIATLVIVVNLIVDLLYGVLNPRIRHTR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]