Click here to switch to the map view.

The map label for this gene is flgD [H]

Identifier: 161526187

GI number: 161526187

Start: 3300388

End: 3301131

Strand: Reverse

Name: flgD [H]

Synonym: Bmul_3018

Alternate gene names: 161526187

Gene position: 3301131-3300388 (Counterclockwise)

Preceding gene: 161526188

Following gene: 161526186

Centisome position: 95.73

GC content: 67.47

Gene sequence:

>744_bases
ATGACCTCCTCCTCCACGACGATCGGCAGCAACGGCACGAACGTATCGACGCTGCCGACCGACACGATGAACACGAACAA
CGTGTCGACGACCGGCACGTCGGCGAGCGACCTGCAGGCGACGTTCCTGAAGCTGCTCGTCACGCAGTTGCAGAACCAGG
ATCCGACGAGCCCGGTCGACAGCTCGCAGATGACGTCGCAGCTCGCGCAGATCAACACGGTGAGCGGCATCGCGCAGCTG
AATACGTCGCTGACGTCGCTGTCGACGCAGCTCGCGGCCGGCCAGCAGACGCAGGCCGCGCTGCTGATCGGCTCGAACGT
GCTCGCGCCGGGCAATACGGTCGCGGTGAAGAGCGGCGCCGCGTCGCCGTTCGGCGTGTCGCTGACCTCCGACGTGTCGA
ACCTGACGATCACCGTGAAGAACTCGGCGGGCGCGGTCGTGAACACGATCAACGCGGGCAGCCAGTCGGCCGGCACCGTG
CCGTTCAACTGGACGCCGACCGACGCGGCCGGCAACGCGCTGCCGGACGGCCAGTACACGATCAGCGCGCAGTACACGGG
CACCGACGGCAAGAGCTATGCGCCGACCGTGCTGACCGCCGCGCAGGTGCAGAGCGTCATCAAGCAGTCCGACGGCACGC
CGGGGCTCGTGCTGTCGAACGGTTCGACGGTAGGCCTCACGCAGGTCGCGTCGATCTTCCCGAACACGGGCTCGTCGTCG
TCCGGCAGCGCGTCCACCAACTGA

Upstream 100 bases:

>100_bases
ACCGCGAAGCAACTGATGCTGAAGACGCTGACGATCGGCTCGTGAGCCGCGCGGCGCCCGATTCGACCGACCCGACAGTT
TCGACACAAGGCCACCGAGC

Downstream 100 bases:

>100_bases
TCCAGCTTCCTCGAAACGGAGACCGAAATGGGTTATCAACAGGGTCTGAGCGGCCTCGCCGGCGCATCGAACGCGCTGGA
CGTGATCGGCAACAACATCG

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MTSSSTTIGSNGTNVSTLPTDTMNTNNVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQL
NTSLTSLSTQLAAGQQTQAALLIGSNVLAPGNTVAVKSGAASPFGVSLTSDVSNLTITVKNSAGAVVNTINAGSQSAGTV
PFNWTPTDAAGNALPDGQYTISAQYTGTDGKSYAPTVLTAAQVQSVIKQSDGTPGLVLSNGSTVGLTQVASIFPNTGSSS
SGSASTN

Sequences:

>Translated_247_residues
MTSSSTTIGSNGTNVSTLPTDTMNTNNVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQL
NTSLTSLSTQLAAGQQTQAALLIGSNVLAPGNTVAVKSGAASPFGVSLTSDVSNLTITVKNSAGAVVNTINAGSQSAGTV
PFNWTPTDAAGNALPDGQYTISAQYTGTDGKSYAPTVLTAAQVQSVIKQSDGTPGLVLSNGSTVGLTQVASIFPNTGSSS
SGSASTN
>Mature_246_residues
TSSSTTIGSNGTNVSTLPTDTMNTNNVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLN
TSLTSLSTQLAAGQQTQAALLIGSNVLAPGNTVAVKSGAASPFGVSLTSDVSNLTITVKNSAGAVVNTINAGSQSAGTVP
FNWTPTDAAGNALPDGQYTISAQYTGTDGKSYAPTVLTAAQVQSVIKQSDGTPGLVLSNGSTVGLTQVASIFPNTGSSSS
GSASTN

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=185, Percent_Identity=42.7027027027027, Blast_Score=130, Evalue=7e-32,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 24584; Mature: 24453

Theoretical pI: Translated: 4.05; Mature: 4.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSSTTIGSNGTNVSTLPTDTMNTNNVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVD
CCCCCCEECCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
SSQMTSQLAQINTVSGIAQLNTSLTSLSTQLAAGQQTQAALLIGSNVLAPGNTVAVKSGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEECCCCEEEEECCC
ASPFGVSLTSDVSNLTITVKNSAGAVVNTINAGSQSAGTVPFNWTPTDAAGNALPDGQYT
CCCCCEEEECCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
ISAQYTGTDGKSYAPTVLTAAQVQSVIKQSDGTPGLVLSNGSTVGLTQVASIFPNTGSSS
EEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCEECHHHHHHHCCCCCCCC
SGSASTN
CCCCCCC
>Mature Secondary Structure 
TSSSTTIGSNGTNVSTLPTDTMNTNNVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVD
CCCCCEECCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
SSQMTSQLAQINTVSGIAQLNTSLTSLSTQLAAGQQTQAALLIGSNVLAPGNTVAVKSGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEECCCCEEEEECCC
ASPFGVSLTSDVSNLTITVKNSAGAVVNTINAGSQSAGTVPFNWTPTDAAGNALPDGQYT
CCCCCEEEECCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
ISAQYTGTDGKSYAPTVLTAAQVQSVIKQSDGTPGLVLSNGSTVGLTQVASIFPNTGSSS
EEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCEECHHHHHHHCCCCCCCC
SGSASTN
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]