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The map label for this gene is rfcS2 [H]

Identifier: 161525976

GI number: 161525976

Start: 3060769

End: 3061515

Strand: Direct

Name: rfcS2 [H]

Synonym: Bmul_2807

Alternate gene names: 161525976

Gene position: 3060769-3061515 (Clockwise)

Preceding gene: 161525975

Following gene: 161525977

Centisome position: 88.76

GC content: 52.88

Gene sequence:

>747_bases
GTGTCCAAGGTGATCTTGACCACCATTTATATAGGAATACGAAATATGGACCTCCTCACTATGATCTACCCCTCTTCTTC
CGCAGAAGCTACTATCCGCATGCTCATTACGCCCGGGCACTCATTTCCGGAAACGAATCAGAATGGCATTATCCTCCACG
GCCCCTTCGGGACAGGGAAATCGACCTGCGCGGAACTCCTGCCTGCGGCCATCGAGGCCAAATACTCGACGCATAAGCCG
ATTGTGCGTTACGAGAGATGCATGGCCGGAAGCAACGGAGTCAGTCTTATCGAGTCCATCGAAACTCAAAGCAAAATCTA
CCCTTTGAACCAGAGATTTCACTACGTCATTCTGGACGAGGCCAACAATCTGACCGGAGACGCAATGACGCAGCTCAAAA
GCGTCATGAACATGACCGACTCAAGCAGGCGCTTTACTACGGCCTTCATCATGACGACAAATCACCGAGATCGTATCGAT
GCGGCAGTACGCTCGCGAAGCCACTGTATTTCGTTCGCACCGGAAAGCCTAGATGTCTGGATTCCACTTGCTCGCAAACT
GCTTTCCGAACACGGTGTGCCGAACGTCAGCCGAATCGGTGACGACCTACTCCGCGCTAATGTTATTGCCTGCGGTAACG
ATCCTCGATCCATCATCAGTAACAGCGAAATCCTCGCGTTCAAGCTCAAGGAGGCGATCGCCGAGCGTCAGAAGCAGGTT
CAGTCGTCCGCACCCGGCACGCCATAA

Upstream 100 bases:

>100_bases
CGGCAACGGTCGGCCATAACGTCGGACACACTCCCGCTCAATCACCCGCCGAAGACCTCGCAACCATCGCGGATAGGCTG
ATCGCCGACTAATCAATCCG

Downstream 100 bases:

>100_bases
ACCAGTATCAGAGCTGTCCGACCATTCGTTTGATCGGACAGGTCCGGATGCGTGAGCTAGGTTTAACCTAGCGCGCAAGT
TAGGCGACGCTCTCAATGAT

Product: AAA ATPase

Products: NA

Alternate protein names: RFC small subunit 2; Clamp loader small subunit 2 [H]

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MSKVILTTIYIGIRNMDLLTMIYPSSSAEATIRMLITPGHSFPETNQNGIILHGPFGTGKSTCAELLPAAIEAKYSTHKP
IVRYERCMAGSNGVSLIESIETQSKIYPLNQRFHYVILDEANNLTGDAMTQLKSVMNMTDSSRRFTTAFIMTTNHRDRID
AAVRSRSHCISFAPESLDVWIPLARKLLSEHGVPNVSRIGDDLLRANVIACGNDPRSIISNSEILAFKLKEAIAERQKQV
QSSAPGTP

Sequences:

>Translated_248_residues
MSKVILTTIYIGIRNMDLLTMIYPSSSAEATIRMLITPGHSFPETNQNGIILHGPFGTGKSTCAELLPAAIEAKYSTHKP
IVRYERCMAGSNGVSLIESIETQSKIYPLNQRFHYVILDEANNLTGDAMTQLKSVMNMTDSSRRFTTAFIMTTNHRDRID
AAVRSRSHCISFAPESLDVWIPLARKLLSEHGVPNVSRIGDDLLRANVIACGNDPRSIISNSEILAFKLKEAIAERQKQV
QSSAPGTP
>Mature_247_residues
SKVILTTIYIGIRNMDLLTMIYPSSSAEATIRMLITPGHSFPETNQNGIILHGPFGTGKSTCAELLPAAIEAKYSTHKPI
VRYERCMAGSNGVSLIESIETQSKIYPLNQRFHYVILDEANNLTGDAMTQLKSVMNMTDSSRRFTTAFIMTTNHRDRIDA
AVRSRSHCISFAPESLDVWIPLARKLLSEHGVPNVSRIGDDLLRANVIACGNDPRSIISNSEILAFKLKEAIAERQKQVQ
SSAPGTP

Specific function: Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA [H]

COG id: COG0470

COG function: function code L; ATPase involved in DNA replication

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the activator 1 small subunits family. RfcS subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR008921
- InterPro:   IPR013748 [H]

Pfam domain/function: PF00004 AAA; PF08542 Rep_fac_C [H]

EC number: NA

Molecular weight: Translated: 27363; Mature: 27232

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKVILTTIYIGIRNMDLLTMIYPSSSAEATIRMLITPGHSFPETNQNGIILHGPFGTGK
CCCEEEEEEEEECCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCEEEECCCCCCH
STCAELLPAAIEAKYSTHKPIVRYERCMAGSNGVSLIESIETQSKIYPLNQRFHYVILDE
HHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHEEECCCCEEEEEEEC
ANNLTGDAMTQLKSVMNMTDSSRRFTTAFIMTTNHRDRIDAAVRSRSHCISFAPESLDVW
CCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHEEEECCCCCEEH
IPLARKLLSEHGVPNVSRIGDDLLRANVIACGNDPRSIISNSEILAFKLKEAIAERQKQV
HHHHHHHHHHCCCCCHHHHHHHHHHHCEEEECCCHHHHHCCCCEEEHHHHHHHHHHHHHH
QSSAPGTP
HHCCCCCC
>Mature Secondary Structure 
SKVILTTIYIGIRNMDLLTMIYPSSSAEATIRMLITPGHSFPETNQNGIILHGPFGTGK
CCEEEEEEEEECCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCEEEECCCCCCH
STCAELLPAAIEAKYSTHKPIVRYERCMAGSNGVSLIESIETQSKIYPLNQRFHYVILDE
HHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHEEECCCCEEEEEEEC
ANNLTGDAMTQLKSVMNMTDSSRRFTTAFIMTTNHRDRIDAAVRSRSHCISFAPESLDVW
CCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHEEEECCCCCEEH
IPLARKLLSEHGVPNVSRIGDDLLRANVIACGNDPRSIISNSEILAFKLKEAIAERQKQV
HHHHHHHHHHCCCCCHHHHHHHHHHHCEEEECCCHHHHHCCCCEEEHHHHHHHHHHHHHH
QSSAPGTP
HHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA