| Definition | Burkholderia multivorans ATCC 17616 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010084 |
| Length | 3,448,466 |
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The map label for this gene is secD [H]
Identifier: 161525835
GI number: 161525835
Start: 2911442
End: 2913463
Strand: Direct
Name: secD [H]
Synonym: Bmul_2666
Alternate gene names: 161525835
Gene position: 2911442-2913463 (Clockwise)
Preceding gene: 161525834
Following gene: 161525836
Centisome position: 84.43
GC content: 67.31
Gene sequence:
>2022_bases ATGAATCGTTACCCACTCTGGAAATATGTCGTGATGGTCGTGGCGCTCGCCATCGGCTTTCTGTACACATTGCCCAATTT CTTCGGCGAAGCGCCGGCGGTGCAGGTGTCGAGCGGCAAGGCCACGGTCAAGCTCGACGCGAACACGCTGACGCAGGTCG AAACGGCGCTCGCGGCCGCGCAGATCAAGCCGGACGACGTCACCTTCGAGAACACGGCGACCAACGCGAACATCCGCGTG CGCCTGAAGGACACCGACACGCAGCTGCGCGTGAAGGATCTGCTGCAAAAGACGCTGAACGCCGACCCGAACGATCCGCA ATACGTGGTCGCGCTGAACCTGCAGAGCGCATCGCCGCGCTGGCTGACCGCGCTGCACGCGCTGCCGATGTATCTGGGCC TCGACCTGCGCGGCGGCGTCCACTTCCTGCTCCAGGTCGACATGACGGGCGCGCTCACGAAGAAGCTCGACTCCGATGCG GCCGACGCGCGCTCGCTGCTGCGCGACAAGAACATCCGCGACGGCGGCGTGAGCCGCGTCGATCAATCGGTCGTCGTCAA CTTCAGCGACGCGCAGACGGCGGAAGACGCACGCAAGGTGCTCGCGTCGTCGATCACCGAACTGCAATGGGCGACGCAGC CGGGCGGCGGCGGCACGCAAGTCGTCGGCACGTTCACGCCGGCCGTGCAGAAGGCCGTCGAAGACGCCGCGCTGAAGCAG AACCTGACCACGCTGCACAACCGCGTGAACGAACTCGGCGTGTCGGAGCCGATCCTGCAGCAGCAAGGCAACGACCGCAT CGTCGTCGAACTGCCGGGCGTACAGGACACCGCGAAGGCGAAGGACATCATCGGCCGCACGGCGACGCTCGAAGCGCGCC TCGCCGATCCGATCAACACGCATCCGAATCCGAACGACCCGGTGCCGCCGGGCGAGGAACTGTTCACGCAGGGCAACCAG GTGCCCGTGCTGCTGAAGAAGGACGTGATCTTCACCGGCGACCGCATCATCGACGCGTCGGCCGGCTTCGACGAGCATCA GCGTCCGTCGGTCAACATCCGCCTCGATTCGGCCGGCGGCCGCGCGGTGCGCACCGTGTCGCGCGACAACATCGGCAAGC CGATGGCGATGGTGCTGTTCGAGAAGGGCAAGGGCGAAGTGCTGACGGTTGCGACGATCCAGTCGGAGCTCGGCGACCGC TTCCAGATCACGGGCCAGCCGACGCCGCAGGCCGCAGCCGATCTCGCGCTGCTGCTGCGCGCCGGCTCGCTCGCCGCGCC GATGGACATCATCGAGGAACGCACGATCGGCCCGAGCCTCGGCGCCGACAACATCAAGATGGGCGTGCACTCGGTGATCT GGGGCTTCTGCGCGATCGCGGTGTTCATGATCGCCTACTACATGCTGTTCGGCGTGATCTCGGTGATCGGTCTGTCGGTC AACCTGCTGCTGCTCGTCGCGGTGCTGTCGCTGATGCAGGCGACGCTGACGCTGCCGGGCATCGCCGCTATCGCGCTCGC ACTCGGTATGGCGATCGACTCGAACGTGCTGATCAACGAGCGCGTGCGTGAGGAACTGCGCGCGGGCCAGCCGCCGCAGC TCGCGATCCAGGCCGGCTACGCGCACGCATGGGCGACGATTCTCGACTCGAACGTGACGACGCTGATCGCCGGTCTCGCG CTGCTCGCGTTCGGTTCGGGCCCGGTGCGCGCGTTCGCGATCGTGCACTGCCTCGGCATCCTGACGTCGATGTTCTCCGC GGTGTTCTTCTCGCGCGGGATCGTCAACCTCTGGTACGGCAGCCGCAAGAAGCTGAAGTCGCTCGCGATCGGCCAGGTGT GGCGGCCGGAAGGCGCCGCAGCGGCCGCGTCGTTCGCGGCGGCCGACGAATCGACCGACACCGCGCGCGCCGCGAAGCTC GCCGCCCCGGCGAAGGGCAACGCGCCGCGCGCCGGCAAGCCGCAGCTGCGCAACCGTGCGCAGCCGGGCGTGTCGCCGAA GAAACCGGGCTCGACCCAATAA
Upstream 100 bases:
>100_bases CACCGAGCGTCCGGCTCCCCGCGTCGCCGCTGCCCTGCCGGGCCGGCCGCCGCGGCGCCGGACGCGACGCTTTCATGCCA ACCATCCGTTCGGCCCCCTC
Downstream 100 bases:
>100_bases GGCCCCGGAGACGAAGCCATGGAATTTTTCCGCATCCGTAAAGACATTCCGTTCATGCGGCACGCGCTGGTGTTCAACGT GATCTCGCTGGTCACGTTCC
Product: preprotein translocase subunit SecD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 673; Mature: 673
Protein sequence:
>673_residues MNRYPLWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLDANTLTQVETALAAAQIKPDDVTFENTATNANIRV RLKDTDTQLRVKDLLQKTLNADPNDPQYVVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA ADARSLLRDKNIRDGGVSRVDQSVVVNFSDAQTAEDARKVLASSITELQWATQPGGGGTQVVGTFTPAVQKAVEDAALKQ NLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQ VPVLLKKDVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGGRAVRTVSRDNIGKPMAMVLFEKGKGEVLTVATIQSELGDR FQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFMIAYYMLFGVISVIGLSV NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLA LLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGIVNLWYGSRKKLKSLAIGQVWRPEGAAAAASFAAADESTDTARAAKL AAPAKGNAPRAGKPQLRNRAQPGVSPKKPGSTQ
Sequences:
>Translated_673_residues MNRYPLWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLDANTLTQVETALAAAQIKPDDVTFENTATNANIRV RLKDTDTQLRVKDLLQKTLNADPNDPQYVVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA ADARSLLRDKNIRDGGVSRVDQSVVVNFSDAQTAEDARKVLASSITELQWATQPGGGGTQVVGTFTPAVQKAVEDAALKQ NLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQ VPVLLKKDVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGGRAVRTVSRDNIGKPMAMVLFEKGKGEVLTVATIQSELGDR FQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFMIAYYMLFGVISVIGLSV NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLA LLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGIVNLWYGSRKKLKSLAIGQVWRPEGAAAAASFAAADESTDTARAAKL AAPAKGNAPRAGKPQLRNRAQPGVSPKKPGSTQ >Mature_673_residues MNRYPLWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLDANTLTQVETALAAAQIKPDDVTFENTATNANIRV RLKDTDTQLRVKDLLQKTLNADPNDPQYVVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA ADARSLLRDKNIRDGGVSRVDQSVVVNFSDAQTAEDARKVLASSITELQWATQPGGGGTQVVGTFTPAVQKAVEDAALKQ NLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQ VPVLLKKDVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGGRAVRTVSRDNIGKPMAMVLFEKGKGEVLTVATIQSELGDR FQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFMIAYYMLFGVISVIGLSV NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLA LLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGIVNLWYGSRKKLKSLAIGQVWRPEGAAAAASFAAADESTDTARAAKL AAPAKGNAPRAGKPQLRNRAQPGVSPKKPGSTQ
Specific function: Involved in protein export [H]
COG id: COG0342
COG function: function code U; Preprotein translocase subunit SecD
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secD/secF family. SecD subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786609, Length=628, Percent_Identity=45.2229299363057, Blast_Score=509, Evalue=1e-145,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005791 - InterPro: IPR022813 - InterPro: IPR022646 - InterPro: IPR022645 [H]
Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]
EC number: NA
Molecular weight: Translated: 71704; Mature: 71704
Theoretical pI: Translated: 8.91; Mature: 8.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRYPLWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLDANTLTQVETALAAA CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCHHHHHHHHHHHHH QIKPDDVTFENTATNANIRVRLKDTDTQLRVKDLLQKTLNADPNDPQYVVALNLQSASPR CCCCCCCEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCH WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDAADARSLLRDKNIRDGGVSRV HHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHC DQSVVVNFSDAQTAEDARKVLASSITELQWATQPGGGGTQVVGTFTPAVQKAVEDAALKQ CCEEEEEECCHHHHHHHHHHHHHHHHHHEECCCCCCCCCEEEEECCHHHHHHHHHHHHHH NLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPINT HHHHHHHHHHHCCCCCHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCEEHHHHCCCCCC HPNPNDPVPPGEELFTQGNQVPVLLKKDVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGG CCCCCCCCCCCHHHHCCCCCCEEEEECCEEEECCEEEECCCCCCCCCCCEEEEEEECCCC RAVRTVSRDNIGKPMAMVLFEKGKGEVLTVATIQSELGDRFQITGQPTPQAAADLALLLR CEEEEECCCCCCCCEEEEEEECCCCCEEEEEEEHHHCCCEEEECCCCCCHHHHHHHHHHH AGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFMIAYYMLFGVISVIGLSV CCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERVREELRAGQPPQLAIQAGY HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCEEEECCH AHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGIVNLWYG HHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCC SRKKLKSLAIGQVWRPEGAAAAASFAAADESTDTARAAKLAAPAKGNAPRAGKPQLRNRA CHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHCC QPGVSPKKPGSTQ CCCCCCCCCCCCC >Mature Secondary Structure MNRYPLWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLDANTLTQVETALAAA CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCHHHHHHHHHHHHH QIKPDDVTFENTATNANIRVRLKDTDTQLRVKDLLQKTLNADPNDPQYVVALNLQSASPR CCCCCCCEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCH WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDAADARSLLRDKNIRDGGVSRV HHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHC DQSVVVNFSDAQTAEDARKVLASSITELQWATQPGGGGTQVVGTFTPAVQKAVEDAALKQ CCEEEEEECCHHHHHHHHHHHHHHHHHHEECCCCCCCCCEEEEECCHHHHHHHHHHHHHH NLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPINT HHHHHHHHHHHCCCCCHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCEEHHHHCCCCCC HPNPNDPVPPGEELFTQGNQVPVLLKKDVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGG CCCCCCCCCCCHHHHCCCCCCEEEEECCEEEECCEEEECCCCCCCCCCCEEEEEEECCCC RAVRTVSRDNIGKPMAMVLFEKGKGEVLTVATIQSELGDRFQITGQPTPQAAADLALLLR CEEEEECCCCCCCCEEEEEEECCCCCEEEEEEEHHHCCCEEEECCCCCCHHHHHHHHHHH AGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFMIAYYMLFGVISVIGLSV CCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERVREELRAGQPPQLAIQAGY HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCEEEECCH AHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGIVNLWYG HHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCC SRKKLKSLAIGQVWRPEGAAAAASFAAADESTDTARAAKLAAPAKGNAPRAGKPQLRNRA CHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHCC QPGVSPKKPGSTQ CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]