Click here to switch to the map view.

The map label for this gene is oxyR [H]

Identifier: 161525830

GI number: 161525830

Start: 2904707

End: 2905666

Strand: Reverse

Name: oxyR [H]

Synonym: Bmul_2661

Alternate gene names: 161525830

Gene position: 2905666-2904707 (Counterclockwise)

Preceding gene: 161525831

Following gene: 161525829

Centisome position: 84.26

GC content: 66.15

Gene sequence:

>960_bases
ATGACGCTGACTGAATTGAAATACATCGTCGCGGTTGCGCGCGAGCGGCATTTCGGCCGCGCGGCCGAAGCGTGCTTCGT
GAGCCAGCCGACGCTGTCGGTGGCGATCAAGAAGCTCGAGGACGAGCTGAACGTGCAGATCTTCGAGCGCGGCGCGAGCG
AAGTGAGCGTCACGCCGATCGGCGACCAGATCGTCACGCAGGCGCAACGCGTGCTCGAGCAGACGTTCGCGATCAAGGAG
ATCGCGAAGCAGGGCAAGGACCCGCTCGTCGGCCCGTTCCGCCTCGGCGTGATCTATACGATCGGCCCGTACCTGCTGCC
GACGCTCGTCAAGCAGATGATCCAGCGCGTGCCGCAGATGCCGCTGATGCTGCAGGAGAACTACACGCTGAAGCTGCTCG
AGCTGCTGAAGCAAGGCGAGATCGACGCGGCGATCATGGCGCTGCCGTTTCCCGAAACGGGGCTGATGGTGCGGCCGCTG
TACGACGAGCCGTTCGTCGTCGCGCTGCCGGCCGGCCATCCATGGGAGAAGCGCCGCGAGATCGACGCGGAAGACCTGAA
GCAGGAAACGATGCTGCTGCTCGGCAACGGGCACTGCTTCCGCGACCACGTGCTCGGCGTGTGCCCGGAACTGATGCGCT
TCTCGCAGACGGCCGACGGCATCCAGAAGACGTTCGAAGGCTCGTCGCTCGAGACGATCCGCCATATGGTCGCAAGCGGC
GTCGGCATCACGGTGCTGCCGAGGATGTCGGTGCCGGAGATCGGCCCGCGCGCGAACGGCCCGGACGCCGAGCTGCTGTC
GTACGTGCCGTTCAACGAGCCGGTGCCCGACCGCCGCGTCGTGCTGGTGTGGCGCAAGAGCTTCACGCGGATGCCGGCGA
TCGACGCGATCAGCGAAGCGATCGCCGCGTGCGAGCTGCCCGGCGTCGCGAAGCTCGACATGCCGGCTACCTTGAACTGA

Upstream 100 bases:

>100_bases
AGCGGCGATCCGCCGACCGCGATGCGGAGAAACTTGGCGAACGGCCGCCACAGGGTGTATAAATTATGCCTATCGCTCGT
TTATACCTGATTGACCCACA

Downstream 100 bases:

>100_bases
CGCGGCCGCCGCGCCGCATCGATCGACGGGGTCTCGCGACCCCGTTTATTTTTCCCTATCGCATAGATTTAAACAATCGA
ATTCTGTTCGGCGATAGATT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MTLTELKYIVAVARERHFGRAAEACFVSQPTLSVAIKKLEDELNVQIFERGASEVSVTPIGDQIVTQAQRVLEQTFAIKE
IAKQGKDPLVGPFRLGVIYTIGPYLLPTLVKQMIQRVPQMPLMLQENYTLKLLELLKQGEIDAAIMALPFPETGLMVRPL
YDEPFVVALPAGHPWEKRREIDAEDLKQETMLLLGNGHCFRDHVLGVCPELMRFSQTADGIQKTFEGSSLETIRHMVASG
VGITVLPRMSVPEIGPRANGPDAELLSYVPFNEPVPDRRVVLVWRKSFTRMPAIDAISEAIAACELPGVAKLDMPATLN

Sequences:

>Translated_319_residues
MTLTELKYIVAVARERHFGRAAEACFVSQPTLSVAIKKLEDELNVQIFERGASEVSVTPIGDQIVTQAQRVLEQTFAIKE
IAKQGKDPLVGPFRLGVIYTIGPYLLPTLVKQMIQRVPQMPLMLQENYTLKLLELLKQGEIDAAIMALPFPETGLMVRPL
YDEPFVVALPAGHPWEKRREIDAEDLKQETMLLLGNGHCFRDHVLGVCPELMRFSQTADGIQKTFEGSSLETIRHMVASG
VGITVLPRMSVPEIGPRANGPDAELLSYVPFNEPVPDRRVVLVWRKSFTRMPAIDAISEAIAACELPGVAKLDMPATLN
>Mature_318_residues
TLTELKYIVAVARERHFGRAAEACFVSQPTLSVAIKKLEDELNVQIFERGASEVSVTPIGDQIVTQAQRVLEQTFAIKEI
AKQGKDPLVGPFRLGVIYTIGPYLLPTLVKQMIQRVPQMPLMLQENYTLKLLELLKQGEIDAAIMALPFPETGLMVRPLY
DEPFVVALPAGHPWEKRREIDAEDLKQETMLLLGNGHCFRDHVLGVCPELMRFSQTADGIQKTFEGSSLETIRHMVASGV
GITVLPRMSVPEIGPRANGPDAELLSYVPFNEPVPDRRVVLVWRKSFTRMPAIDAISEAIAACELPGVAKLDMPATLN

Specific function: Required for the induction of a regulon of hydrogen peroxide inducible genes such as catalase and glutathione- reductase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790399, Length=303, Percent_Identity=39.9339933993399, Blast_Score=217, Evalue=6e-58,
Organism=Escherichia coli, GI1787530, Length=261, Percent_Identity=27.9693486590038, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI157672245, Length=309, Percent_Identity=26.8608414239482, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1788748, Length=311, Percent_Identity=26.6881028938907, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI145693105, Length=298, Percent_Identity=26.510067114094, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI2367136, Length=242, Percent_Identity=28.5123966942149, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1788887, Length=292, Percent_Identity=27.3972602739726, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787879, Length=303, Percent_Identity=26.0726072607261, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787601, Length=189, Percent_Identity=27.5132275132275, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87081904, Length=176, Percent_Identity=33.5227272727273, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788481, Length=251, Percent_Identity=24.7011952191235, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1790262, Length=259, Percent_Identity=26.2548262548263, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1787806, Length=297, Percent_Identity=22.2222222222222, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788296, Length=177, Percent_Identity=26.5536723163842, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786401, Length=313, Percent_Identity=26.8370607028754, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790208, Length=249, Percent_Identity=26.9076305220884, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788297, Length=261, Percent_Identity=24.904214559387, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35395; Mature: 35264

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLTELKYIVAVARERHFGRAAEACFVSQPTLSVAIKKLEDELNVQIFERGASEVSVTPI
CCHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCHHHEECCCCEEEECCC
GDQIVTQAQRVLEQTFAIKEIAKQGKDPLVGPFRLGVIYTIGPYLLPTLVKQMIQRVPQM
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PLMLQENYTLKLLELLKQGEIDAAIMALPFPETGLMVRPLYDEPFVVALPAGHPWEKRRE
CEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCCCEEEEECCCCCHHHHHC
IDAEDLKQETMLLLGNGHCFRDHVLGVCPELMRFSQTADGIQKTFEGSSLETIRHMVASG
CCHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
VGITVLPRMSVPEIGPRANGPDAELLSYVPFNEPVPDRRVVLVWRKSFTRMPAIDAISEA
CCEEEECCCCCCCCCCCCCCCCHHHHEECCCCCCCCCCEEEEEEEHHCCCCCHHHHHHHH
IAACELPGVAKLDMPATLN
HHHHCCCCCEEECCCCCCC
>Mature Secondary Structure 
TLTELKYIVAVARERHFGRAAEACFVSQPTLSVAIKKLEDELNVQIFERGASEVSVTPI
CHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCHHHEECCCCEEEECCC
GDQIVTQAQRVLEQTFAIKEIAKQGKDPLVGPFRLGVIYTIGPYLLPTLVKQMIQRVPQM
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PLMLQENYTLKLLELLKQGEIDAAIMALPFPETGLMVRPLYDEPFVVALPAGHPWEKRRE
CEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCCCEEEEECCCCCHHHHHC
IDAEDLKQETMLLLGNGHCFRDHVLGVCPELMRFSQTADGIQKTFEGSSLETIRHMVASG
CCHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
VGITVLPRMSVPEIGPRANGPDAELLSYVPFNEPVPDRRVVLVWRKSFTRMPAIDAISEA
CCEEEECCCCCCCCCCCCCCCCHHHHEECCCCCCCCCCEEEEEEEHHCCCCCHHHHHHHH
IAACELPGVAKLDMPATLN
HHHHCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA