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The map label for this gene is ykgD [C]

Identifier: 161525762

GI number: 161525762

Start: 2815705

End: 2816652

Strand: Reverse

Name: ykgD [C]

Synonym: Bmul_2593

Alternate gene names: 161525762

Gene position: 2816652-2815705 (Counterclockwise)

Preceding gene: 161525775

Following gene: 161525761

Centisome position: 81.68

GC content: 71.31

Gene sequence:

>948_bases
ATGGATGCATTGAGCCAACTGTTATTGCTCGGGCGCAGCCACGTCGAGCTCGATCTGCGCTGTCTGCTCGACGGCGCGTT
CGCGATGCCGCACGCACCGCTGCCGCCCGGCGAGGCGGCCTTTCATCTGGTGCTGGCGGGCAGTTGCCGGCTGCGTACCG
CCGGCGGCCGTACGTTGCAACTGGCCGAAGGCGACTTCGTGTTGCTGCCGGGCGGCGACGCGCACGATCTGCTCGACGCG
ATCGCGGTCCGGTCGCGCGTCACCGCGCCGTTGCGCGAGCCGGACCGCGACGGCGGCACGGTGCTGCCGATCAAGTCGAA
TCTGGGTGCAGCCGACCGGGATCGCGCGAGCGTGGATCTGCTCTGCGGACGCTTCGTCTACGCACGCGGCGCCGGCGAAT
TGCTGATGCGGACGTTGCCGCGCATGCTGCACGTGGGTTTGCGCGACGGGCTCGCGACGGCGCCGCCGCTGCAGTGGCTG
ACGGATGCGCTGCGCAGCGAGGCGTCGAGCGCGCAGCCGGGTGCGCGGGCGATCGTGAATGCGCTCGGGCAGGCGTTGCT
CGCGTATGCGCTGCGCGCGTACGGGCGCGATACGCGGATGCCGTCGGGCTGGCTCGCAGTCGCGGCCGACGCGCGGCTCG
GCCCGTCGGTTCTCGCCGTGCTGCAGGCGCCGGCGCAGCCGTGGACGGTCGAGTCGCTCGGCGACGCCGTCGCGATGTCG
CGCGCGACCTATGCCCGGCATTTTCGCGAGAAGGCGGGGATGAGCGTCGGTGCATTTGTGGCGCAGGTCAGGATGATGCA
TGCGTGCACGCTGCTGCAGGAGACGCAGCGCGGGCAGGCGGAAATCGGGCAGGCGGTGGGGTATCAGTCGGAGGCGGCGT
TCGGGAAGGCGTTTCGTGCGGTGCTCGGTACGACGCCGGGGAGGTGGCGGCGGGCGTGGCGGGAATAG

Upstream 100 bases:

>100_bases
GGGCGGCCGCAGCCGCAATCTTGGCGATGCAGGGCTATTCTGCGCGTTCGCACTGAGGCTTTCGATACGCTACAGTGTCG
ATTTTTAGCGCAATCGTCTC

Downstream 100 bases:

>100_bases
GGGCATGTGGCTGTGGAAGGCCGAGATCGCGCGGATCGGGAAATTGCAGTGGTGGGAGCAGGCGGCCGGCGTTGAAGGGG
TTTCCGAAGAAGGAGATGTT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MDALSQLLLLGRSHVELDLRCLLDGAFAMPHAPLPPGEAAFHLVLAGSCRLRTAGGRTLQLAEGDFVLLPGGDAHDLLDA
IAVRSRVTAPLREPDRDGGTVLPIKSNLGAADRDRASVDLLCGRFVYARGAGELLMRTLPRMLHVGLRDGLATAPPLQWL
TDALRSEASSAQPGARAIVNALGQALLAYALRAYGRDTRMPSGWLAVAADARLGPSVLAVLQAPAQPWTVESLGDAVAMS
RATYARHFREKAGMSVGAFVAQVRMMHACTLLQETQRGQAEIGQAVGYQSEAAFGKAFRAVLGTTPGRWRRAWRE

Sequences:

>Translated_315_residues
MDALSQLLLLGRSHVELDLRCLLDGAFAMPHAPLPPGEAAFHLVLAGSCRLRTAGGRTLQLAEGDFVLLPGGDAHDLLDA
IAVRSRVTAPLREPDRDGGTVLPIKSNLGAADRDRASVDLLCGRFVYARGAGELLMRTLPRMLHVGLRDGLATAPPLQWL
TDALRSEASSAQPGARAIVNALGQALLAYALRAYGRDTRMPSGWLAVAADARLGPSVLAVLQAPAQPWTVESLGDAVAMS
RATYARHFREKAGMSVGAFVAQVRMMHACTLLQETQRGQAEIGQAVGYQSEAAFGKAFRAVLGTTPGRWRRAWRE
>Mature_315_residues
MDALSQLLLLGRSHVELDLRCLLDGAFAMPHAPLPPGEAAFHLVLAGSCRLRTAGGRTLQLAEGDFVLLPGGDAHDLLDA
IAVRSRVTAPLREPDRDGGTVLPIKSNLGAADRDRASVDLLCGRFVYARGAGELLMRTLPRMLHVGLRDGLATAPPLQWL
TDALRSEASSAQPGARAIVNALGQALLAYALRAYGRDTRMPSGWLAVAADARLGPSVLAVLQAPAQPWTVESLGDAVAMS
RATYARHFREKAGMSVGAFVAQVRMMHACTLLQETQRGQAEIGQAVGYQSEAAFGKAFRAVLGTTPGRWRRAWRE

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=318, Percent_Identity=26.7295597484277, Blast_Score=115, Evalue=4e-27,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33643; Mature: 33643

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDALSQLLLLGRSHVELDLRCLLDGAFAMPHAPLPPGEAAFHLVLAGSCRLRTAGGRTLQ
CCHHHHHHHHCCCCCCEEHHHHHCCHHCCCCCCCCCCHHHEEEEEECCEEEEECCCCEEE
LAEGDFVLLPGGDAHDLLDAIAVRSRVTAPLREPDRDGGTVLPIKSNLGAADRDRASVDL
EECCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHH
LCGRFVYARGAGELLMRTLPRMLHVGLRDGLATAPPLQWLTDALRSEASSAQPGARAIVN
HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
ALGQALLAYALRAYGRDTRMPSGWLAVAADARLGPSVLAVLQAPAQPWTVESLGDAVAMS
HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
RATYARHFREKAGMSVGAFVAQVRMMHACTLLQETQRGQAEIGQAVGYQSEAAFGKAFRA
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHH
VLGTTPGRWRRAWRE
HHCCCCHHHHHHHCC
>Mature Secondary Structure
MDALSQLLLLGRSHVELDLRCLLDGAFAMPHAPLPPGEAAFHLVLAGSCRLRTAGGRTLQ
CCHHHHHHHHCCCCCCEEHHHHHCCHHCCCCCCCCCCHHHEEEEEECCEEEEECCCCEEE
LAEGDFVLLPGGDAHDLLDAIAVRSRVTAPLREPDRDGGTVLPIKSNLGAADRDRASVDL
EECCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHH
LCGRFVYARGAGELLMRTLPRMLHVGLRDGLATAPPLQWLTDALRSEASSAQPGARAIVN
HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
ALGQALLAYALRAYGRDTRMPSGWLAVAADARLGPSVLAVLQAPAQPWTVESLGDAVAMS
HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
RATYARHFREKAGMSVGAFVAQVRMMHACTLLQETQRGQAEIGQAVGYQSEAAFGKAFRA
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHH
VLGTTPGRWRRAWRE
HHCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]