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The map label for this gene is rfbA [H]

Identifier: 161525685

GI number: 161525685

Start: 2736000

End: 2736821

Strand: Reverse

Name: rfbA [H]

Synonym: Bmul_2516

Alternate gene names: 161525685

Gene position: 2736821-2736000 (Counterclockwise)

Preceding gene: 161525686

Following gene: 161525684

Centisome position: 79.36

GC content: 53.04

Gene sequence:

>822_bases
ATGAGGATAATATCTCCCATCCTTCGCGGGGTTCGTTCTATCGTGTCCCATCGTGACTTGCTTCGCCGCCTCGTGTGGCG
GGACATCCAAGGGCGTTATCGCGGCTCTGCAGGTGGCCTCGGCTGGGCGATCATTACGCCATTGGTGCTGTTGAGTGTTT
ACACGTTCGTCTTCAGCTTCGTGCTCAAGTCGCGCTGGGTTGGCGTGCCGAACCAAGACTCTCACGCAACCTACGCCATC
ATGTGCTTTTCCGGGCTGATCGTGTACAGCGTATTTACGGAATGTATTTCGCGCGCTCCGACATTAATGACTGGGAACGT
GAACTACGTGAAGAAGGTCGTGTTTCCGCTGGAGATTCTTCCGATCGTGTCGCTCGGAAGCGCACTATTTCATTTCGCAA
TTGGCTTCACAGTGCTGATGGTATTCATCGTGGTATTCGGCTCGGGTGTGCCGGCTACTGCGTGGGCTGCCTGGCTCGTG
CTGCCGCCGCTCATGCTCTGGTGCATCGGCCTTGGTTGGATCCTGTCGTCTCTCGGTGTATTTCTGCGTGATCTCGGACA
GCTCGTTACGTTGGTGCTGAGTGTGTTAATGTTCGCGACGCCAATTTTTTATTCTGCAGATAGCCTGCCGGAGCAATACC
GCATTTATATGGACCTTAATCCATTATCGTTTGTGATCGGAACGTTGCGAGAAACAGTTATCCTGGGCCGCTATCCTGAT
CCATTGTCGTATTTTCAGCATCTTTTCCCGGGTATCTTGGTGGCGGTCTTTGGTATGTGGTGGTTTGAGCATACACGTGG
AGGATTCGCAGATGTCCTCTAA

Upstream 100 bases:

>100_bases
ACGTGTACTTCATCCATGACGCCCGAATTGAGCGGGCTGCTCGCCTTAAGCCGATGCCGGTTGCCATGATTAATCAATAA
TACTTTCGAATGCAGATCAT

Downstream 100 bases:

>100_bases
TGTGATTATTTCCGTTGCAGATCTCGGTAAGTGCTATCAGTTGTACGCGAAGCCGAGCGATCGCCTGAAGCAGATGCTCT
TTGGGCGCTTTAAGCGCTAT

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MRIISPILRGVRSIVSHRDLLRRLVWRDIQGRYRGSAGGLGWAIITPLVLLSVYTFVFSFVLKSRWVGVPNQDSHATYAI
MCFSGLIVYSVFTECISRAPTLMTGNVNYVKKVVFPLEILPIVSLGSALFHFAIGFTVLMVFIVVFGSGVPATAWAAWLV
LPPLMLWCIGLGWILSSLGVFLRDLGQLVTLVLSVLMFATPIFYSADSLPEQYRIYMDLNPLSFVIGTLRETVILGRYPD
PLSYFQHLFPGILVAVFGMWWFEHTRGGFADVL

Sequences:

>Translated_273_residues
MRIISPILRGVRSIVSHRDLLRRLVWRDIQGRYRGSAGGLGWAIITPLVLLSVYTFVFSFVLKSRWVGVPNQDSHATYAI
MCFSGLIVYSVFTECISRAPTLMTGNVNYVKKVVFPLEILPIVSLGSALFHFAIGFTVLMVFIVVFGSGVPATAWAAWLV
LPPLMLWCIGLGWILSSLGVFLRDLGQLVTLVLSVLMFATPIFYSADSLPEQYRIYMDLNPLSFVIGTLRETVILGRYPD
PLSYFQHLFPGILVAVFGMWWFEHTRGGFADVL
>Mature_273_residues
MRIISPILRGVRSIVSHRDLLRRLVWRDIQGRYRGSAGGLGWAIITPLVLLSVYTFVFSFVLKSRWVGVPNQDSHATYAI
MCFSGLIVYSVFTECISRAPTLMTGNVNYVKKVVFPLEILPIVSLGSALFHFAIGFTVLMVFIVVFGSGVPATAWAAWLV
LPPLMLWCIGLGWILSSLGVFLRDLGQLVTLVLSVLMFATPIFYSADSLPEQYRIYMDLNPLSFVIGTLRETVILGRYPD
PLSYFQHLFPGILVAVFGMWWFEHTRGGFADVL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 30589; Mature: 30589

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7533882 [H]