Click here to switch to the map view.

The map label for this gene is cspA [H]

Identifier: 161525563

GI number: 161525563

Start: 2607076

End: 2607279

Strand: Reverse

Name: cspA [H]

Synonym: Bmul_2393

Alternate gene names: 161525563

Gene position: 2607279-2607076 (Counterclockwise)

Preceding gene: 161525566

Following gene: 161525562

Centisome position: 75.61

GC content: 52.45

Gene sequence:

>204_bases
ATGGATACCGGTATCGTGAAATGGTTTAACGATGCTAAAGGTTTCGGCTTTATTACGTCCGACAATGGCGGCGAGGATTT
GTTTGCGCACTTTTCCGAAATCCGGATGGACGGTTTCAAGACGCTGAAGGAAAACCAGCGCGTTTCGTTCGACGTGAAGG
TCGGGCCGAAGGGCAAGCAGGCTGCGAACATCCAGGCGCTCTGA

Upstream 100 bases:

>100_bases
GGAGCAGTGCCCGGTACCGGTGCCGGCGCCCGATCGCGGGATTTCGGGAATCAGCTATAACGTAGCGATTTTTTTATCAA
ATTGAGTGGGGAACGAAGGT

Downstream 100 bases:

>100_bases
CGCGCCACGCATGGCCGATCAAGCAGGCCCCCGCAATGGCGGGGGCTTTTTGCATCTGGGCGGCGAATCGCGCCGCGCGT
GGTGCATACTCACGGCAGCA

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 67

Protein sequence:

>67_residues
MDTGIVKWFNDAKGFGFITSDNGGEDLFAHFSEIRMDGFKTLKENQRVSFDVKVGPKGKQAANIQAL

Sequences:

>Translated_67_residues
MDTGIVKWFNDAKGFGFITSDNGGEDLFAHFSEIRMDGFKTLKENQRVSFDVKVGPKGKQAANIQAL
>Mature_67_residues
MDTGIVKWFNDAKGFGFITSDNGGEDLFAHFSEIRMDGFKTLKENQRVSFDVKVGPKGKQAANIQAL

Specific function: Inhibits DNA Replication At Both Initiation And Elongation Steps, Most Probably By Binding To The Opened, Single- Stranded Regions At Replication Forks. Plays A Regulatory Role In Chromosomal Replication In Nutrient-Depleted Cells. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=62.5, Blast_Score=91, Evalue=2e-20,
Organism=Escherichia coli, GI1789979, Length=65, Percent_Identity=58.4615384615385, Blast_Score=83, Evalue=3e-18,
Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=59.375, Blast_Score=82, Evalue=5e-18,
Organism=Escherichia coli, GI1787834, Length=65, Percent_Identity=56.9230769230769, Blast_Score=81, Evalue=2e-17,
Organism=Escherichia coli, GI2367114, Length=65, Percent_Identity=53.8461538461538, Blast_Score=79, Evalue=5e-17,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=54.6875, Blast_Score=76, Evalue=5e-16,
Organism=Escherichia coli, GI1787839, Length=62, Percent_Identity=53.2258064516129, Blast_Score=74, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71983217, Length=56, Percent_Identity=48.2142857142857, Blast_Score=62, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24658520, Length=63, Percent_Identity=41.2698412698413, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7424; Mature: 7424

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTGIVKWFNDAKGFGFITSDNGGEDLFAHFSEIRMDGFKTLKENQRVSFDVKVGPKGKQ
CCCCCEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
AANIQAL
CCCEECC
>Mature Secondary Structure
MDTGIVKWFNDAKGFGFITSDNGGEDLFAHFSEIRMDGFKTLKENQRVSFDVKVGPKGKQ
CCCCCEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
AANIQAL
CCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12910271 [H]