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The map label for this gene is yncD [C]

Identifier: 161525558

GI number: 161525558

Start: 2601751

End: 2604117

Strand: Reverse

Name: yncD [C]

Synonym: Bmul_2388

Alternate gene names: 161525558

Gene position: 2604117-2601751 (Counterclockwise)

Preceding gene: 161525559

Following gene: 161525557

Centisome position: 75.52

GC content: 67.93

Gene sequence:

>2367_bases
ATGTTGCTTACCCTTGCCGCGCGACCGACGCGCGGCCGGCTCGCGCTGGCGTGCGCGGCCGCTTTTGCCTTGCCCGGCGC
ATATGCGGCATCGTCCGACAGCGCGCCGACCGATCCGGTCCGCGATCCCGCGAACCGCTCCGCGCGGGCCGTCGTGCCCG
CGGCTTCCGCGGCTTCGGCTGCTTCCGCCGAACCGGCCGGCGACACGCTGAGCGCCGTCAGCGTGACGGCCCAGCGCCAG
CCGCTCGATCCCGATACGCCGGCCGTCGTCGAATCGATGACGCGCGAGCGCATCGACACGCATACCAACGTCACGGCCGA
GGACACGCTGAAGTACGCGCCGAACCTGATGGTGCGCAAGCGCTATATCGGCGACCGCAACAGCGTGTTCGCGGGGCGCG
ACTTCAACGAGCTGCAGAGCGCGCGGGGCCTCGTCTATGCGGACGGCCTGCTGTTGTCGAACCTGCTCGGTTCGAGCTAT
GCGTATCCGCCGCGCTGGTCGCTGATCGCGCCCGACGACATCGCGCGCGTCGACGTGCTGTACGGCCCGTTTTCGGCGCT
GTATCCGGGCAATGCGATCGGCTCGACCGTGCTACTGACCACGCGGCGGCCGGACAAGCTCGAGGCGTCGCTGTCGACGC
AGTTCTTCACGCAGCGCTATCGCGACGGCTACGGATTCGCCGACAGCTTCGGCGGCAATCATCAGACTGCGCGGATCGCG
AACCGCATCGGCCGCTTCTGGTTCTCGCTGTCGCTCGACCGGCTCGAGAACGACGGTCAGCCGATGCAGTACGCGAGCCC
GAACGCGAGCTACAACGCGAAACTCGGCCGCGCGGTGCCCGTCACGGGCGCCGCCACCGACATCGGGCCGAACGGCAAGG
CGCGCACGATCGTCGGCGCGCAATCGCTCGAGCGCACCGAGCAGATCAACGAAACGGTGCGCATGGGCTATGCGTTCACC
GACCGCGTCGACGCGACGCTGACGCTCGGGCATTGGGAGAACCACTACCGCCAGCACGGCGACACGTTTCTGCGCGACGC
GGCCGGCCAGCCGGTCTATGGCGGCAACGTGGCGATCGGCGGGCAGAACCTGACGATCGCGCCCGGCGCATTCGCGCCGC
AGCGCGGCGACCAGGAGAACTGGCTGTACGCGTTCGGGCTGAACGGCCGGCTCGCGTCGGGCTGGCGGCTGTCGGGCATC
GTGTCGGCGTACGACGTGTCGCGCGACGTGCTGCGCGCCGCGTCTACCGCGCAGGGCGGGGCGGGCACGCTGTTCCAGGG
TGACGGCACCGGCTGGCGCACGCTCGACCTGAAGGCCGAAGCGCCCGAGGTGCACGGTCATGCGTTCACGTTCGGCTATC
ACTACGACAACTATTTCCTGCGCAACGTCACATACAACACGGCCGACTGGCTGAACGGTCCGGTCACGTCGCTCGCCAGC
GTCTATCGCGGCGATACGCGCACGCAGGCGCTCTACGCGCAGGACGCATGGCGCTTCGCGCCGGGCTGGCTCGCGACGCT
CGGGCTGCGCTACGAGCGCTGGGACGCCTACGGCGGCGCGCTCGGCAACGCGAGCGGCACGTTCGGCTATGCGGATCGCA
GCGCCAACGCGCTGTCGCCGAAAGTTGCGCTGCAATGGGATGCGACCGACGTGTGGCGCTTCCGGCTGTCGTTCGCGACC
GGCACGCGTTTTCCGACGGTCGGCGAGCTGTTCCAGGGGACGATCTCGAACAACGCGATCGTCAACAACAATCCGAACCT
GCGCCCCGAAAAGGCGATCGACTGGGACTTCACCGCGGAGCGCGACGTCGGCGTCGGCGTCGTGCGTGCGAGCGTGTTCC
AGAGCGACTTGCGCGATTCCATCTACAGCCAGACGACGGTCGCCGGCGCCTCGACGGTCACCAACATCTCGAACGTCGAC
CGCGTGCGCGTGCGCGGCGTCGAACTCGCGTTCAGCGGCGAAAACGTCGGGCTCAAGGGGCTCGCGATCGACGCGAACGT
ATCGGCGAGCAATGCGCAGATTCTCGCCGATGCCGCCAACCCGGCGTACGTCGGCTCGCGCTTTCCGCGCATTCCGCGGA
TGCGCGCGAATCTGCTCGCGTCGTATCGCTTCGACGAGCACTGGCTCGCGAGCGTCGGCGTGCGCTATTCGGGCCGGCAG
TTCAACACGCTCGACAACAGCGACGTGAATCCCGACGTCTATGGCGGCACGAGCGCGTTTACGGTCGTCGACGTGAAGGC
GCGCTATCGCTTCGATCGTCACTGGACCGCATCGGTTGGCATCGACAACCTGACGGACCGCCGCTACTACGTGTTCCACC
CGTATCCGGGTCGCACTTTCTATGGAGAACTGAAATGGTCGCTGTGA

Upstream 100 bases:

>100_bases
GCTGCCCGCGGCCGATGCCGCGCACCGCGCGTTTGCTGCGCGGCGCGCCGGCGTCCGCGTTTGCACGGCGGTATCCGGTC
ACGTTTTCAGGAAATCCTCC

Downstream 100 bases:

>100_bases
AATCGATCGTCGCCGGCTGCGCGCTGTGGCTCGCGGCGCTGTCGTCGGCCGGCGCGCACGATGCGCCGGCGCCCGCCGAT
CCGCATGCCGCGCACATGAG

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Receptor Protein; NB-Dependent Siderophore Receptor; Outer Membrane Receptor; Nb-Dependent Receptor; NB Dependent Receptor; Outer Membrane Receptor Protein; Vitamin; Exogenous Ferric Siderophore Receptor; Exogenous Ferric Siderophore nB-Dependent Receptor; Ferrisiderophore Receptor Protein; Outer Membrane Receptor Family Protein; NB-Dependent Receptor Domain Protein; Fe Transport Outer Membrane Receptor Protein

Number of amino acids: Translated: 788; Mature: 788

Protein sequence:

>788_residues
MLLTLAARPTRGRLALACAAAFALPGAYAASSDSAPTDPVRDPANRSARAVVPAASAASAASAEPAGDTLSAVSVTAQRQ
PLDPDTPAVVESMTRERIDTHTNVTAEDTLKYAPNLMVRKRYIGDRNSVFAGRDFNELQSARGLVYADGLLLSNLLGSSY
AYPPRWSLIAPDDIARVDVLYGPFSALYPGNAIGSTVLLTTRRPDKLEASLSTQFFTQRYRDGYGFADSFGGNHQTARIA
NRIGRFWFSLSLDRLENDGQPMQYASPNASYNAKLGRAVPVTGAATDIGPNGKARTIVGAQSLERTEQINETVRMGYAFT
DRVDATLTLGHWENHYRQHGDTFLRDAAGQPVYGGNVAIGGQNLTIAPGAFAPQRGDQENWLYAFGLNGRLASGWRLSGI
VSAYDVSRDVLRAASTAQGGAGTLFQGDGTGWRTLDLKAEAPEVHGHAFTFGYHYDNYFLRNVTYNTADWLNGPVTSLAS
VYRGDTRTQALYAQDAWRFAPGWLATLGLRYERWDAYGGALGNASGTFGYADRSANALSPKVALQWDATDVWRFRLSFAT
GTRFPTVGELFQGTISNNAIVNNNPNLRPEKAIDWDFTAERDVGVGVVRASVFQSDLRDSIYSQTTVAGASTVTNISNVD
RVRVRGVELAFSGENVGLKGLAIDANVSASNAQILADAANPAYVGSRFPRIPRMRANLLASYRFDEHWLASVGVRYSGRQ
FNTLDNSDVNPDVYGGTSAFTVVDVKARYRFDRHWTASVGIDNLTDRRYYVFHPYPGRTFYGELKWSL

Sequences:

>Translated_788_residues
MLLTLAARPTRGRLALACAAAFALPGAYAASSDSAPTDPVRDPANRSARAVVPAASAASAASAEPAGDTLSAVSVTAQRQ
PLDPDTPAVVESMTRERIDTHTNVTAEDTLKYAPNLMVRKRYIGDRNSVFAGRDFNELQSARGLVYADGLLLSNLLGSSY
AYPPRWSLIAPDDIARVDVLYGPFSALYPGNAIGSTVLLTTRRPDKLEASLSTQFFTQRYRDGYGFADSFGGNHQTARIA
NRIGRFWFSLSLDRLENDGQPMQYASPNASYNAKLGRAVPVTGAATDIGPNGKARTIVGAQSLERTEQINETVRMGYAFT
DRVDATLTLGHWENHYRQHGDTFLRDAAGQPVYGGNVAIGGQNLTIAPGAFAPQRGDQENWLYAFGLNGRLASGWRLSGI
VSAYDVSRDVLRAASTAQGGAGTLFQGDGTGWRTLDLKAEAPEVHGHAFTFGYHYDNYFLRNVTYNTADWLNGPVTSLAS
VYRGDTRTQALYAQDAWRFAPGWLATLGLRYERWDAYGGALGNASGTFGYADRSANALSPKVALQWDATDVWRFRLSFAT
GTRFPTVGELFQGTISNNAIVNNNPNLRPEKAIDWDFTAERDVGVGVVRASVFQSDLRDSIYSQTTVAGASTVTNISNVD
RVRVRGVELAFSGENVGLKGLAIDANVSASNAQILADAANPAYVGSRFPRIPRMRANLLASYRFDEHWLASVGVRYSGRQ
FNTLDNSDVNPDVYGGTSAFTVVDVKARYRFDRHWTASVGIDNLTDRRYYVFHPYPGRTFYGELKWSL
>Mature_788_residues
MLLTLAARPTRGRLALACAAAFALPGAYAASSDSAPTDPVRDPANRSARAVVPAASAASAASAEPAGDTLSAVSVTAQRQ
PLDPDTPAVVESMTRERIDTHTNVTAEDTLKYAPNLMVRKRYIGDRNSVFAGRDFNELQSARGLVYADGLLLSNLLGSSY
AYPPRWSLIAPDDIARVDVLYGPFSALYPGNAIGSTVLLTTRRPDKLEASLSTQFFTQRYRDGYGFADSFGGNHQTARIA
NRIGRFWFSLSLDRLENDGQPMQYASPNASYNAKLGRAVPVTGAATDIGPNGKARTIVGAQSLERTEQINETVRMGYAFT
DRVDATLTLGHWENHYRQHGDTFLRDAAGQPVYGGNVAIGGQNLTIAPGAFAPQRGDQENWLYAFGLNGRLASGWRLSGI
VSAYDVSRDVLRAASTAQGGAGTLFQGDGTGWRTLDLKAEAPEVHGHAFTFGYHYDNYFLRNVTYNTADWLNGPVTSLAS
VYRGDTRTQALYAQDAWRFAPGWLATLGLRYERWDAYGGALGNASGTFGYADRSANALSPKVALQWDATDVWRFRLSFAT
GTRFPTVGELFQGTISNNAIVNNNPNLRPEKAIDWDFTAERDVGVGVVRASVFQSDLRDSIYSQTTVAGASTVTNISNVD
RVRVRGVELAFSGENVGLKGLAIDANVSASNAQILADAANPAYVGSRFPRIPRMRANLLASYRFDEHWLASVGVRYSGRQ
FNTLDNSDVNPDVYGGTSAFTVVDVKARYRFDRHWTASVGIDNLTDRRYYVFHPYPGRTFYGELKWSL

Specific function: Probable Receptor, Tonb-Dependent. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 85811; Mature: 85811

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLTLAARPTRGRLALACAAAFALPGAYAASSDSAPTDPVRDPANRSARAVVPAASAASA
CEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
ASAEPAGDTLSAVSVTAQRQPLDPDTPAVVESMTRERIDTHTNVTAEDTLKYAPNLMVRK
CCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEEH
RYIGDRNSVFAGRDFNELQSARGLVYADGLLLSNLLGSSYAYPPRWSLIAPDDIARVDVL
HHCCCCCCEECCCCHHHHHHHCCEEEECHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEE
YGPFSALYPGNAIGSTVLLTTRRPDKLEASLSTQFFTQRYRDGYGFADSFGGNHQTARIA
ECCHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
NRIGRFWFSLSLDRLENDGQPMQYASPNASYNAKLGRAVPVTGAATDIGPNGKARTIVGA
HHHHHHHHEEEHHHHCCCCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECH
QSLERTEQINETVRMGYAFTDRVDATLTLGHWENHYRQHGDTFLRDAAGQPVYGGNVAIG
HHHHHHHHHHHHHHHCEEEECCCCEEEEECCHHHHHHHHCCHHHHHCCCCCCCCCEEEEC
GQNLTIAPGAFAPQRGDQENWLYAFGLNGRLASGWRLSGIVSAYDVSRDVLRAASTAQGG
CCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCC
AGTLFQGDGTGWRTLDLKAEAPEVHGHAFTFGYHYDNYFLRNVTYNTADWLNGPVTSLAS
CCEEEECCCCCEEEEEEECCCCCCCCEEEEEEEEECCEEEEEEECCCHHHCCCCHHHHHH
VYRGDTRTQALYAQDAWRFAPGWLATLGLRYERWDAYGGALGNASGTFGYADRSANALSP
HHCCCCHHEEEECCCCCCCCCCHHHHHCCEEEEHHCCCCCCCCCCCCCCCCCCCCCCCCC
KVALQWDATDVWRFRLSFATGTRFPTVGELFQGTISNNAIVNNNPNLRPEKAIDWDFTAE
EEEEEECCCEEEEEEEEEECCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCC
RDVGVGVVRASVFQSDLRDSIYSQTTVAGASTVTNISNVDRVRVRGVELAFSGENVGLKG
CCCCHHHHHHHHHHHHHHHHHHHHHEECCCHHHHCCCCCCEEEEEEEEEEECCCCCCEEE
LAIDANVSASNAQILADAANPAYVGSRFPRIPRMRANLLASYRFDEHWLASVGVRYSGRQ
EEEECCCCCCCCEEEEECCCCCHHCCCCCCCCHHHHHHHHHCCCCHHHHHHCCEEECCCE
FNTLDNSDVNPDVYGGTSAFTVVDVKARYRFDRHWTASVGIDNLTDRRYYVFHPYPGRTF
ECCCCCCCCCCCCCCCCCEEEEEEEEEHEEECCEEEEECCCCCCCCCEEEEEECCCCCEE
YGELKWSL
EEEEEECC
>Mature Secondary Structure
MLLTLAARPTRGRLALACAAAFALPGAYAASSDSAPTDPVRDPANRSARAVVPAASAASA
CEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
ASAEPAGDTLSAVSVTAQRQPLDPDTPAVVESMTRERIDTHTNVTAEDTLKYAPNLMVRK
CCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEEH
RYIGDRNSVFAGRDFNELQSARGLVYADGLLLSNLLGSSYAYPPRWSLIAPDDIARVDVL
HHCCCCCCEECCCCHHHHHHHCCEEEECHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEE
YGPFSALYPGNAIGSTVLLTTRRPDKLEASLSTQFFTQRYRDGYGFADSFGGNHQTARIA
ECCHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
NRIGRFWFSLSLDRLENDGQPMQYASPNASYNAKLGRAVPVTGAATDIGPNGKARTIVGA
HHHHHHHHEEEHHHHCCCCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECH
QSLERTEQINETVRMGYAFTDRVDATLTLGHWENHYRQHGDTFLRDAAGQPVYGGNVAIG
HHHHHHHHHHHHHHHCEEEECCCCEEEEECCHHHHHHHHCCHHHHHCCCCCCCCCEEEEC
GQNLTIAPGAFAPQRGDQENWLYAFGLNGRLASGWRLSGIVSAYDVSRDVLRAASTAQGG
CCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCC
AGTLFQGDGTGWRTLDLKAEAPEVHGHAFTFGYHYDNYFLRNVTYNTADWLNGPVTSLAS
CCEEEECCCCCEEEEEEECCCCCCCCEEEEEEEEECCEEEEEEECCCHHHCCCCHHHHHH
VYRGDTRTQALYAQDAWRFAPGWLATLGLRYERWDAYGGALGNASGTFGYADRSANALSP
HHCCCCHHEEEECCCCCCCCCCHHHHHCCEEEEHHCCCCCCCCCCCCCCCCCCCCCCCCC
KVALQWDATDVWRFRLSFATGTRFPTVGELFQGTISNNAIVNNNPNLRPEKAIDWDFTAE
EEEEEECCCEEEEEEEEEECCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCC
RDVGVGVVRASVFQSDLRDSIYSQTTVAGASTVTNISNVDRVRVRGVELAFSGENVGLKG
CCCCHHHHHHHHHHHHHHHHHHHHHEECCCHHHHCCCCCCEEEEEEEEEEECCCCCCEEE
LAIDANVSASNAQILADAANPAYVGSRFPRIPRMRANLLASYRFDEHWLASVGVRYSGRQ
EEEECCCCCCCCEEEEECCCCCHHCCCCCCCCHHHHHHHHHCCCCHHHHHHCCEEECCCE
FNTLDNSDVNPDVYGGTSAFTVVDVKARYRFDRHWTASVGIDNLTDRRYYVFHPYPGRTF
ECCCCCCCCCCCCCCCCCEEEEEEEEEHEEECCEEEEECCCCCCCCCEEEEEECCCCCEE
YGELKWSL
EEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA