| Definition | Burkholderia multivorans ATCC 17616 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010084 |
| Length | 3,448,466 |
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The map label for this gene is 161525503
Identifier: 161525503
GI number: 161525503
Start: 2541602
End: 2542201
Strand: Direct
Name: 161525503
Synonym: Bmul_2333
Alternate gene names: NA
Gene position: 2541602-2542201 (Clockwise)
Preceding gene: 161525502
Following gene: 161525504
Centisome position: 73.7
GC content: 69.67
Gene sequence:
>600_bases ATGACGACCCAATCCAACACCACATGCACGCACGAAGCCGTGCCGCATTCTCGCTCGCGCCGACGCGCTCGCCTCGCGCT GGCCGGCTTCGCCGCTGTCGGCTTCGCTGCACTGGTCTGGGCAGCTTTCGTGTCGCCGCTGCCGCGTCTGACCTACAACC CGTCCGACAGCGTGGCGGTCGGTTGGTATCGCATCGAACCGTTCGACCCGCGCACCGCCTCGCTGCCACGTCCGCTGTCC GTGGACAGCATCGTGCTGGTGCCGCTGCCCGACAGGGCCGCCATGCTGGCTGCGCAGCGCGGCTACCTGCCGACCCGCGT GCCGCTACTCAAACGTGTGGGCGCGGTCGCGCCGCAACACGTTTGCATCGTCGCCGGGCAGGTACGCATCGACGGCGTGC CTGCGGCCGCCGCGCTGCCTGCCGACCGGCTGGGCCGGCCGCTGCCATCCTGGCCGCATTGCCGTCCGCTGGCCGAGGGC GAACTGTTCCTGTTGAGCGTGACCAATCCGGCATCGTTCGACAGCCGCTATTTCGGCCCGGTCAGCGCATCCGACGTGAT CGGCGTCGCGCATCCGGTCTGGCTGGAGACACGCCCATGA
Upstream 100 bases:
>100_bases CGTACTGGCGCACGCTGGGCAACCGTCTGGCGGCCCGCCTGCCGCTGCCCGAATACACCGCCGAGCGGCACGCCGCCTGG CTGGCCGGGAGGGCGCTGCC
Downstream 100 bases:
>100_bases TGGCCGCCGATTCGCAGCCCGTTGCCGTGCATCTCATCGTGCCATCGGGCATGCCGTTCCGGCTGCTGCCGCCGTGTCGT CGCGCGTGCTGCGCGGGCGC
Product: putative conjugal transfer TRAF transmembrane protein
Products: NA
Alternate protein names: Conjugal Transfer Protein TraF; TraF Peptidase; Conjugal Transfer TRAF Transmembrane Protein; Type IV Secretory Pathway Protease TraF-Like Protein; Peptidase; Conjugative Transfer Signal Peptidase TraF; Type IV Secretory Pathway Protease TraF; Plasmid Transfer Protein TraF; Peptidase S; Raf Peptidase. Serine Peptidase. Merops Family; Conjugal Transfer Protein Traf; Conjugal Transfer TraF Transmembrane Protein; Plasmid Transfer Protein Traf; Traf Peptidase Serine Peptidase Merops Family; Transmembrane Anchor Conjugal Transfer Protein; RaF Peptidase. Serine Peptidase. MEROPS Family; TraF Peptidase Serine Peptidase MEROPS Family
Number of amino acids: Translated: 199; Mature: 198
Protein sequence:
>199_residues MTTQSNTTCTHEAVPHSRSRRRARLALAGFAAVGFAALVWAAFVSPLPRLTYNPSDSVAVGWYRIEPFDPRTASLPRPLS VDSIVLVPLPDRAAMLAAQRGYLPTRVPLLKRVGAVAPQHVCIVAGQVRIDGVPAAAALPADRLGRPLPSWPHCRPLAEG ELFLLSVTNPASFDSRYFGPVSASDVIGVAHPVWLETRP
Sequences:
>Translated_199_residues MTTQSNTTCTHEAVPHSRSRRRARLALAGFAAVGFAALVWAAFVSPLPRLTYNPSDSVAVGWYRIEPFDPRTASLPRPLS VDSIVLVPLPDRAAMLAAQRGYLPTRVPLLKRVGAVAPQHVCIVAGQVRIDGVPAAAALPADRLGRPLPSWPHCRPLAEG ELFLLSVTNPASFDSRYFGPVSASDVIGVAHPVWLETRP >Mature_198_residues TTQSNTTCTHEAVPHSRSRRRARLALAGFAAVGFAALVWAAFVSPLPRLTYNPSDSVAVGWYRIEPFDPRTASLPRPLSV DSIVLVPLPDRAAMLAAQRGYLPTRVPLLKRVGAVAPQHVCIVAGQVRIDGVPAAAALPADRLGRPLPSWPHCRPLAEGE LFLLSVTNPASFDSRYFGPVSASDVIGVAHPVWLETRP
Specific function: Unknown
COG id: COG4959
COG function: function code OU; Type IV secretory pathway, protease TraF
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21413; Mature: 21282
Theoretical pI: Translated: 10.38; Mature: 10.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTQSNTTCTHEAVPHSRSRRRARLALAGFAAVGFAALVWAAFVSPLPRLTYNPSDSVAV CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEE GWYRIEPFDPRTASLPRPLSVDSIVLVPLPDRAAMLAAQRGYLPTRVPLLKRVGAVAPQH EEEEECCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCE VCIVAGQVRIDGVPAAAALPADRLGRPLPSWPHCRPLAEGELFLLSVTNPASFDSRYFGP EEEEECEEEECCCCCHHCCCHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCC VSASDVIGVAHPVWLETRP CCCCCEEECCCCEEEECCC >Mature Secondary Structure TTQSNTTCTHEAVPHSRSRRRARLALAGFAAVGFAALVWAAFVSPLPRLTYNPSDSVAV CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEE GWYRIEPFDPRTASLPRPLSVDSIVLVPLPDRAAMLAAQRGYLPTRVPLLKRVGAVAPQH EEEEECCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCE VCIVAGQVRIDGVPAAAALPADRLGRPLPSWPHCRPLAEGELFLLSVTNPASFDSRYFGP EEEEECEEEECCCCCHHCCCHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCC VSASDVIGVAHPVWLETRP CCCCCEEECCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA