Click here to switch to the map view.

The map label for this gene is ybfI [H]

Identifier: 161525376

GI number: 161525376

Start: 2422426

End: 2423337

Strand: Direct

Name: ybfI [H]

Synonym: Bmul_2206

Alternate gene names: 161525376

Gene position: 2422426-2423337 (Clockwise)

Preceding gene: 161525375

Following gene: 161525377

Centisome position: 70.25

GC content: 73.14

Gene sequence:

>912_bases
ATGGCCGATCGCCGCCTTCGAGACTCCGCCCGCTACTGGCGCACGCCATTGCTGCCGGACGCCGATCTCGTCACCGCAAC
CTATCGCGACCATGCGTTCGCGCCGCACTGGCACGACGCCTACACGATCCCCGTCATCCTCGAAGGCGCGGAGCGCTTCA
CCTATCGCGGCAGCGGCTACGTCGCGGAAGCGGGCACCGTCCCCGTCATCAATCCCGGCGAAGTGCATACGGGCTCGCGC
GGCGCGGACGAAGGCTGGCGCTATCGCGTGAGCTACGTGCCGGTCGATTTCATCCGCTCGCTCGCCGATGCGATCGTCGG
CCGTCCGCAGAACGCGCCGTGGTTCCCGCCCGACGTGATCCGCGATGCCGATCTCGCCGCGCGCCTCGCGTGCGCGCACC
GGATGATGGAAGCCGGCAGCACGGCAGCCGCGCGTGCGCGCGACGCGTGGGCCGGCTACAGCGAGGACACCGACGTACGG
CCGCCCCACGCGGCCCGCGCCTACGATCCGCTCGCCGCGGAAACGGCGATGCTCGACGCGCTCTCGACGCTGATCGTGCG
GCACGCGGACACGCGGCCGCGCCCCGCCCCGCTCGCCGCCGACGAACCGCGCGTCGACGTGATGCGCGAGCGGCTCGCGG
CCGACCTGACGGCCACCGTCACGCTCGACGAGGTCGCACAGGCGGCCGGCCTGTCGCCGTTTCACGCGGCGCGCCTGTTC
ACGCGCGCGACCGGGATGCCGCCGCATGCGTGGCGCAACCAGCTGCGGCTGCAGCGCGCACTCGCGCCGCTGCGCGCGGG
CGTGCCGGTCGCCGACGTCGCGGCCGCCAGCGGTTTCGTCGACCAGAGCCACTTCACGCGGCATTTCAAGCGGATGTTCG
GCGTGCCGCCGGGACGCTGGCAGGCGCGGTAG

Upstream 100 bases:

>100_bases
CGCGGTGCCGGTCCCGCCGGGCACGACGATTCCGGTCAAGTAAGCGCATCGCGCGCGCTCGATCCGCCGTCGAATCGAGC
GCCGCGCGCCGAGCACGACC

Downstream 100 bases:

>100_bases
ACATCGCGGCGGGCCGCGTCGTCTCTCTACGTGTGCATGGGTTCGGCGGCCGCGGGCACGGCCGTTGCGCGCGCCAGCGC
AAGAACCGACCGCGCCGGCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MADRRLRDSARYWRTPLLPDADLVTATYRDHAFAPHWHDAYTIPVILEGAERFTYRGSGYVAEAGTVPVINPGEVHTGSR
GADEGWRYRVSYVPVDFIRSLADAIVGRPQNAPWFPPDVIRDADLAARLACAHRMMEAGSTAAARARDAWAGYSEDTDVR
PPHAARAYDPLAAETAMLDALSTLIVRHADTRPRPAPLAADEPRVDVMRERLAADLTATVTLDEVAQAAGLSPFHAARLF
TRATGMPPHAWRNQLRLQRALAPLRAGVPVADVAAASGFVDQSHFTRHFKRMFGVPPGRWQAR

Sequences:

>Translated_303_residues
MADRRLRDSARYWRTPLLPDADLVTATYRDHAFAPHWHDAYTIPVILEGAERFTYRGSGYVAEAGTVPVINPGEVHTGSR
GADEGWRYRVSYVPVDFIRSLADAIVGRPQNAPWFPPDVIRDADLAARLACAHRMMEAGSTAAARARDAWAGYSEDTDVR
PPHAARAYDPLAAETAMLDALSTLIVRHADTRPRPAPLAADEPRVDVMRERLAADLTATVTLDEVAQAAGLSPFHAARLF
TRATGMPPHAWRNQLRLQRALAPLRAGVPVADVAAASGFVDQSHFTRHFKRMFGVPPGRWQAR
>Mature_302_residues
ADRRLRDSARYWRTPLLPDADLVTATYRDHAFAPHWHDAYTIPVILEGAERFTYRGSGYVAEAGTVPVINPGEVHTGSRG
ADEGWRYRVSYVPVDFIRSLADAIVGRPQNAPWFPPDVIRDADLAARLACAHRMMEAGSTAAARARDAWAGYSEDTDVRP
PHAARAYDPLAAETAMLDALSTLIVRHADTRPRPAPLAADEPRVDVMRERLAADLTATVTLDEVAQAAGLSPFHAARLFT
RATGMPPHAWRNQLRLQRALAPLRAGVPVADVAAASGFVDQSHFTRHFKRMFGVPPGRWQAR

Specific function: Activator Of The L-Rhamnose Operon. Rhar Putatively Autoregulates Its Synthesis. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33384; Mature: 33253

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADRRLRDSARYWRTPLLPDADLVTATYRDHAFAPHWHDAYTIPVILEGAERFTYRGSGY
CCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEEECCHHEEECCCCE
VAEAGTVPVINPGEVHTGSRGADEGWRYRVSYVPVDFIRSLADAIVGRPQNAPWFPPDVI
EECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCHHHH
RDADLAARLACAHRMMEAGSTAAARARDAWAGYSEDTDVRPPHAARAYDPLAAETAMLDA
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCHHHHHHHHHH
LSTLIVRHADTRPRPAPLAADEPRVDVMRERLAADLTATVTLDEVAQAAGLSPFHAARLF
HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEHHHHHHHHCCCHHHHHHHH
TRATGMPPHAWRNQLRLQRALAPLRAGVPVADVAAASGFVDQSHFTRHFKRMFGVPPGRW
HHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCC
QAR
CCC
>Mature Secondary Structure 
ADRRLRDSARYWRTPLLPDADLVTATYRDHAFAPHWHDAYTIPVILEGAERFTYRGSGY
CCCHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEEECCHHEEECCCCE
VAEAGTVPVINPGEVHTGSRGADEGWRYRVSYVPVDFIRSLADAIVGRPQNAPWFPPDVI
EECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCHHHH
RDADLAARLACAHRMMEAGSTAAARARDAWAGYSEDTDVRPPHAARAYDPLAAETAMLDA
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCHHHHHHHHHH
LSTLIVRHADTRPRPAPLAADEPRVDVMRERLAADLTATVTLDEVAQAAGLSPFHAARLF
HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEHHHHHHHHCCCHHHHHHHH
TRATGMPPHAWRNQLRLQRALAPLRAGVPVADVAAASGFVDQSHFTRHFKRMFGVPPGRW
HHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCC
QAR
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]