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The map label for this gene is yfeR [H]

Identifier: 161524934

GI number: 161524934

Start: 1951259

End: 1952161

Strand: Reverse

Name: yfeR [H]

Synonym: Bmul_1761

Alternate gene names: 161524934

Gene position: 1952161-1951259 (Counterclockwise)

Preceding gene: 161524937

Following gene: 161524933

Centisome position: 56.61

GC content: 71.1

Gene sequence:

>903_bases
ATGAACGTCACGCTGCGCCAGCTTCGCGTATTCATCGAGGTCGCGCGGCTCAGGAGCTTCAGCCGCGCCGGCGACGAGAT
CGGGCTCACGCAGTCCGCCGTCAGCCGTTGCGTGCGCGAACTGGAGACCGAGCTCGGGCTGAAGCTGATCGACCGCACGA
CGCGCGACGTGCAGCTGACCGACGTCGGCGCGAACCTGATCGCGAGCGTGTCGCGGCAGCTCGACGATCTCGACGACACG
CTGCGCGAAATTCGCGAGATCGGCGAGCAGCGCCGCGGGCGCGTGATCGTCGCGGCGAGCCCGACGATCGCGTGCCGGCT
GATGCCGCGCGTCGTCGCGTCGTGCGAGCGGCAGTTTCCGTTCGTCACGCTCGGGCTGCGCGACGACGTGCAAAGCGACG
TGCTGCGCAAGGTGAAGTCGAGCGAAGTCGACTTCGGCGTCGTGATCGGGCCGCTGGCCGTCGCGGATCTCGTCTGCGAG
CCGCTGATGACCGACTCGTTCTGCCTCGTCGCGCGCGCCGATCATCCGCTGGCCGCGCGCACCGAGGTGCCGTGGACCGC
GCTGAACGGCGAGCGCCTCGTGTTGCTCGATCACGCCTCGGGCAGCCGTCCGCTGATCGATGCGGCGCTGGCCGCTCACC
GCGTCAGCGCGACGGTGATGCAGGAGCTCGGCCATTCCGCGACCGTGTTCGGGCTCGTCGAGGCGGGCATCGGCGTGAGC
GTGCAGCCGTGGTTGTCGCTGCCGTTGCCGGCCGGCTCGACGCTCGTCGCGCGGCCGCTGACGCCGCGCACCGAGCGGAC
GGTCGAGCTCGTGCGGCGCCGCGACCGGTCGCTGTCGCCTGCCGCGCAGGCGATCTGGGAACTGGTGCGCCAGATGCCGT
CGCGCGCGGAGGACCTCGACTGA

Upstream 100 bases:

>100_bases
ACCGCAGCGAAACACGCCGTGCCGAGCTCGACTCGTACCTCGCGCGATCCGTCGCGCATTAAAATCGCGCATCGATATCG
ACGATTGATGAGGTCCGGGG

Downstream 100 bases:

>100_bases
CGCGCGTGCGGCCCGGCGTCGTGGGTACACTACGCGAATCGTGTTCCCCCGATGGCGATCGACGATGGTGCATTCCGCAG
ATTCCGCAGAGTTCGAGCCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MNVTLRQLRVFIEVARLRSFSRAGDEIGLTQSAVSRCVRELETELGLKLIDRTTRDVQLTDVGANLIASVSRQLDDLDDT
LREIREIGEQRRGRVIVAASPTIACRLMPRVVASCERQFPFVTLGLRDDVQSDVLRKVKSSEVDFGVVIGPLAVADLVCE
PLMTDSFCLVARADHPLAARTEVPWTALNGERLVLLDHASGSRPLIDAALAAHRVSATVMQELGHSATVFGLVEAGIGVS
VQPWLSLPLPAGSTLVARPLTPRTERTVELVRRRDRSLSPAAQAIWELVRQMPSRAEDLD

Sequences:

>Translated_300_residues
MNVTLRQLRVFIEVARLRSFSRAGDEIGLTQSAVSRCVRELETELGLKLIDRTTRDVQLTDVGANLIASVSRQLDDLDDT
LREIREIGEQRRGRVIVAASPTIACRLMPRVVASCERQFPFVTLGLRDDVQSDVLRKVKSSEVDFGVVIGPLAVADLVCE
PLMTDSFCLVARADHPLAARTEVPWTALNGERLVLLDHASGSRPLIDAALAAHRVSATVMQELGHSATVFGLVEAGIGVS
VQPWLSLPLPAGSTLVARPLTPRTERTVELVRRRDRSLSPAAQAIWELVRQMPSRAEDLD
>Mature_300_residues
MNVTLRQLRVFIEVARLRSFSRAGDEIGLTQSAVSRCVRELETELGLKLIDRTTRDVQLTDVGANLIASVSRQLDDLDDT
LREIREIGEQRRGRVIVAASPTIACRLMPRVVASCERQFPFVTLGLRDDVQSDVLRKVKSSEVDFGVVIGPLAVADLVCE
PLMTDSFCLVARADHPLAARTEVPWTALNGERLVLLDHASGSRPLIDAALAAHRVSATVMQELGHSATVFGLVEAGIGVS
VQPWLSLPLPAGSTLVARPLTPRTERTVELVRRRDRSLSPAAQAIWELVRQMPSRAEDLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788748, Length=290, Percent_Identity=51.0344827586207, Blast_Score=286, Evalue=1e-78,
Organism=Escherichia coli, GI145693105, Length=299, Percent_Identity=30.7692307692308, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI157672245, Length=289, Percent_Identity=30.4498269896194, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1788481, Length=284, Percent_Identity=31.6901408450704, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1787879, Length=256, Percent_Identity=30.46875, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1790399, Length=302, Percent_Identity=27.1523178807947, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1788887, Length=289, Percent_Identity=23.5294117647059, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1786401, Length=176, Percent_Identity=34.6590909090909, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788297, Length=295, Percent_Identity=25.7627118644068, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1787601, Length=195, Percent_Identity=27.6923076923077, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789204, Length=301, Percent_Identity=27.2425249169435, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081904, Length=177, Percent_Identity=29.9435028248588, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI2367136, Length=245, Percent_Identity=25.7142857142857, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787128, Length=186, Percent_Identity=26.8817204301075, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789506, Length=299, Percent_Identity=24.4147157190635, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788706, Length=165, Percent_Identity=27.8787878787879, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787530, Length=243, Percent_Identity=24.2798353909465, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786508, Length=146, Percent_Identity=26.7123287671233, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786713, Length=178, Percent_Identity=27.5280898876405, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789173, Length=180, Percent_Identity=30.5555555555556, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788296, Length=242, Percent_Identity=24.3801652892562, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787589, Length=152, Percent_Identity=28.9473684210526, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790011, Length=112, Percent_Identity=29.4642857142857, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1789639, Length=122, Percent_Identity=26.2295081967213, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32908; Mature: 32908

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVTLRQLRVFIEVARLRSFSRAGDEIGLTQSAVSRCVRELETELGLKLIDRTTRDVQLT
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHHCCCCCCEEEE
DVGANLIASVSRQLDDLDDTLREIREIGEQRRGRVIVAASPTIACRLMPRVVASCERQFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCC
FVTLGLRDDVQSDVLRKVKSSEVDFGVVIGPLAVADLVCEPLMTDSFCLVARADHPLAAR
EEEECCHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
TEVPWTALNGERLVLLDHASGSRPLIDAALAAHRVSATVMQELGHSATVFGLVEAGIGVS
CCCCEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCE
VQPWLSLPLPAGSTLVARPLTPRTERTVELVRRRDRSLSPAAQAIWELVRQMPSRAEDLD
ECCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHCCCCC
>Mature Secondary Structure
MNVTLRQLRVFIEVARLRSFSRAGDEIGLTQSAVSRCVRELETELGLKLIDRTTRDVQLT
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHHCCCCCCEEEE
DVGANLIASVSRQLDDLDDTLREIREIGEQRRGRVIVAASPTIACRLMPRVVASCERQFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCC
FVTLGLRDDVQSDVLRKVKSSEVDFGVVIGPLAVADLVCEPLMTDSFCLVARADHPLAAR
EEEECCHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
TEVPWTALNGERLVLLDHASGSRPLIDAALAAHRVSATVMQELGHSATVFGLVEAGIGVS
CCCCEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCE
VQPWLSLPLPAGSTLVARPLTPRTERTVELVRRRDRSLSPAAQAIWELVRQMPSRAEDLD
ECCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]