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The map label for this gene is rbfA [H]

Identifier: 161524927

GI number: 161524927

Start: 1941109

End: 1941507

Strand: Reverse

Name: rbfA [H]

Synonym: Bmul_1754

Alternate gene names: 161524927

Gene position: 1941507-1941109 (Counterclockwise)

Preceding gene: 161524928

Following gene: 161524926

Centisome position: 56.3

GC content: 63.16

Gene sequence:

>399_bases
ATGTCCAGGAAACGTACTTCTCCCAATCGCAACGTGCAGATCGCCGATCAGATTCAGCGCGACCTGTCCGAACTCATCAT
GCGCGAGGTCAAGGATCCGCGCATCGGCATCGTGACCATCCAGAGCGTCGAACTGACGCCGGACTACGCGCACGCGAAGG
TCTATTTCACGACGCTGACCGGCGATCCGGCCGCGACGCAGCAGGCGCTGAACCACGCGTCGGGCCATCTGCACAACCTG
CTGTTCAAGCGGCTGCACATCCATACGGTGCCGACGCTGCACTTCCACTACGACCAGACGATCGAGAAGGCCGTCGCGAT
GTCGCGTCTGATCGACGAGGCGAACGCGACGCGGGCGAAGGACGACGACGAGGCCGACGCGCCGGCGAAGGACGACTGA

Upstream 100 bases:

>100_bases
GGGCGGGGCAGGCTTGGGCCTGTCCCGCCCATTTTTTCATGGCCGCGCGCCGTTCGGCGCGCCGCCGTTTTATCCTGATA
AACGGATCAGGGATTCGATC

Downstream 100 bases:

>100_bases
GCGTATCCCGCCTATGACGACTGCAGCATCCCCACGTCCGCGCGTACCGCGCCGCGCGCTGGACGGCGTCCTGCTGCTCG
ACAAGCCGGTCGGCCTGTCG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 131

Protein sequence:

>132_residues
MSRKRTSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTTLTGDPAATQQALNHASGHLHNL
LFKRLHIHTVPTLHFHYDQTIEKAVAMSRLIDEANATRAKDDDEADAPAKDD

Sequences:

>Translated_132_residues
MSRKRTSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTTLTGDPAATQQALNHASGHLHNL
LFKRLHIHTVPTLHFHYDQTIEKAVAMSRLIDEANATRAKDDDEADAPAKDD
>Mature_131_residues
SRKRTSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTTLTGDPAATQQALNHASGHLHNLL
FKRLHIHTVPTLHFHYDQTIEKAVAMSRLIDEANATRAKDDDEADAPAKDD

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=116, Percent_Identity=36.2068965517241, Blast_Score=79, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 14893; Mature: 14762

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRKRTSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTTLT
CCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCEEEEEEEEC
GDPAATQQALNHASGHLHNLLFKRLHIHTVPTLHFHYDQTIEKAVAMSRLIDEANATRAK
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCC
DDDEADAPAKDD
CCCCCCCCCCCC
>Mature Secondary Structure 
SRKRTSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTTLT
CCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCEEEEEEEEC
GDPAATQQALNHASGHLHNLLFKRLHIHTVPTLHFHYDQTIEKAVAMSRLIDEANATRAK
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCC
DDDEADAPAKDD
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA