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The map label for this gene is dgoR [H]

Identifier: 161524855

GI number: 161524855

Start: 1850932

End: 1851648

Strand: Reverse

Name: dgoR [H]

Synonym: Bmul_1682

Alternate gene names: 161524855

Gene position: 1851648-1850932 (Counterclockwise)

Preceding gene: 161524856

Following gene: 161524854

Centisome position: 53.69

GC content: 67.09

Gene sequence:

>717_bases
ATGGAGCAGGGCAAAGACCGGTCACTGGTCGCCAAAGTGATGGATGGACTTGTCACGGGTATCGTCGAGGACAAGTATGG
CGGCATCCTGCCGCCGCAGGACGTGCTATCGAAAGAGTTCGACGTGAGCCGCACGGTGATGCGCGAAGCATTGTCGATGT
TGCTGGCGCGCGACATGCTCGACGTGCGTCCGAAAGTCGGCACGCGCGTGCGTCCGATGCGCGACTGGCGCATGATCGAC
GAAGACGTCGTCAGCTGGCGGTTCCGGGCGAAACCCGATCCGCAGTTCATGCGCGACGTCATCGAGTTCCGCATGCTGAT
CGAGCCGCGCGCCACCGCGCAGGCGGCCGTGCGCGCGACCGCGACCGACATCGCCGGCATCCGTGAGGCGTTCGAAGCGT
TCAAGGTGCTGGAGCCCGGCGATCCCGGCTACGACACGGCGGACGAACTGCTGCATACGCGGATCGTGCAGGCGAGCGGC
AACCAGTTCTTCCAGCAGATGGCGGCGATCGTGCGCGGCGCGGTGCGGCTCGTCAATCCGCGCGTCGTGCAGAAGGAAGG
CGCGCACGAGGTCGCGGTGCAGGCGCATGCGCGCGTCGTCGATGCGATCGAGCGGCGCGACCCGCGCGAGGCGGAAGCCG
CCGCGCTCGCGCTGATCGATTTCAGCGCGGACGAGATCTCGCGCGACTTCTCGGTCGAAGTGCCCGTGCGCGCGTGA

Upstream 100 bases:

>100_bases
GGCCTCGAACTCATCGACTTATAGATCATAAGAACAGTCGTAACCAGGGCCGGCGGAACTGCGGAGCAGGTTTTCGCAAA
TCGACGCACGGGGAGGTGTC

Downstream 100 bases:

>100_bases
GCGCGTTGCCGATCCGGATGCCGGCGCGCCGTTTATCATGACGGCCTGCCGGCGTCGTGCCGGCCGTTGCTCCACGACCG
ACACGGAAGATCCGGATGAA

Product: GntR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MEQGKDRSLVAKVMDGLVTGIVEDKYGGILPPQDVLSKEFDVSRTVMREALSMLLARDMLDVRPKVGTRVRPMRDWRMID
EDVVSWRFRAKPDPQFMRDVIEFRMLIEPRATAQAAVRATATDIAGIREAFEAFKVLEPGDPGYDTADELLHTRIVQASG
NQFFQQMAAIVRGAVRLVNPRVVQKEGAHEVAVQAHARVVDAIERRDPREAEAAALALIDFSADEISRDFSVEVPVRA

Sequences:

>Translated_238_residues
MEQGKDRSLVAKVMDGLVTGIVEDKYGGILPPQDVLSKEFDVSRTVMREALSMLLARDMLDVRPKVGTRVRPMRDWRMID
EDVVSWRFRAKPDPQFMRDVIEFRMLIEPRATAQAAVRATATDIAGIREAFEAFKVLEPGDPGYDTADELLHTRIVQASG
NQFFQQMAAIVRGAVRLVNPRVVQKEGAHEVAVQAHARVVDAIERRDPREAEAAALALIDFSADEISRDFSVEVPVRA
>Mature_238_residues
MEQGKDRSLVAKVMDGLVTGIVEDKYGGILPPQDVLSKEFDVSRTVMREALSMLLARDMLDVRPKVGTRVRPMRDWRMID
EDVVSWRFRAKPDPQFMRDVIEFRMLIEPRATAQAAVRATATDIAGIREAFEAFKVLEPGDPGYDTADELLHTRIVQASG
NQFFQQMAAIVRGAVRLVNPRVVQKEGAHEVAVQAHARVVDAIERRDPREAEAAALALIDFSADEISRDFSVEVPVRA

Specific function: Repressor for the dgoRKAT operon. Binds D-galactonate as an inducer [H]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994955, Length=214, Percent_Identity=30.3738317757009, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI48994961, Length=225, Percent_Identity=26.6666666666667, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26655; Mature: 26655

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQGKDRSLVAKVMDGLVTGIVEDKYGGILPPQDVLSKEFDVSRTVMREALSMLLARDML
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVRPKVGTRVRPMRDWRMIDEDVVSWRFRAKPDPQFMRDVIEFRMLIEPRATAQAAVRAT
HCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
ATDIAGIREAFEAFKVLEPGDPGYDTADELLHTRIVQASGNQFFQQMAAIVRGAVRLVNP
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
RVVQKEGAHEVAVQAHARVVDAIERRDPREAEAAALALIDFSADEISRDFSVEVPVRA
HHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHCCCCEEECCCCC
>Mature Secondary Structure
MEQGKDRSLVAKVMDGLVTGIVEDKYGGILPPQDVLSKEFDVSRTVMREALSMLLARDML
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVRPKVGTRVRPMRDWRMIDEDVVSWRFRAKPDPQFMRDVIEFRMLIEPRATAQAAVRAT
HCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
ATDIAGIREAFEAFKVLEPGDPGYDTADELLHTRIVQASGNQFFQQMAAIVRGAVRLVNP
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
RVVQKEGAHEVAVQAHARVVDAIERRDPREAEAAALALIDFSADEISRDFSVEVPVRA
HHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]