Click here to switch to the map view.

The map label for this gene is crtB [H]

Identifier: 161524510

GI number: 161524510

Start: 1469345

End: 1470403

Strand: Reverse

Name: crtB [H]

Synonym: Bmul_1337

Alternate gene names: 161524510

Gene position: 1470403-1469345 (Counterclockwise)

Preceding gene: 161524513

Following gene: 161524506

Centisome position: 42.64

GC content: 71.58

Gene sequence:

>1059_bases
TTGCGTCGCCAGACCGCGCGGGCGCATCGTCTGCGCCCCGCACGTCGGGGTTTGCGGCCGGCGACACCGGCGCCCCGATC
AGGCGAGCGCGAGATTCTACCCGATCTGCGCGGCGTTGTCTCGCTCGCCGGCACCGCGCGGTCGGCGGTGCTAGAATGCC
GCGCTCGACGTGACGGCGCCGCCGCCCGTGCGCGTCCGTCCCTGCCCCCGACCCGAATCTGCCCCGTGAACTTCGACGAT
TACTGCCAGCAAAAGGCCGCCCCCGCGGGCTCCAGCGTCTACTACGCATTGCGTCAGGCGCCGGCCGCGGTCGAGCCGCG
CCTGACCGCGCTGTTTGCGCTGCGCCGCGAACTCGAGGAAACCGTCAAGGAAATCAGCGACCCGACCGTCGGACACACGA
AGCTCGCGTGGTGGCACAAGGAGCTCGCGGCGCTCGCGAACGGCCAGCCGTCGCATCCGGTCACGCAGGCGCTCGCGCGG
CACCATCCGTCGATCGCCGCCGAAGCCGACGCGCTGCGCACGCTCGTGAACGGCTACGGGATGGATCTCGAGCAGGCGCG
CTATCTCGATTTCGCGAATCTGCAGCGCTACGTCGCACAGGTGGGCGGCACGTTCGCGGCGCTCGTCGCGCGCGCGGCCG
CCGCGCAACCGGGCGACCCGCAGCCCTGGGCGGCCGACGTCGGCCGCGCACTGATGCTCGCGCAGTTCGTGCAGGAGCTC
GGCAACGACGCGCGCCACGGCCGCATCTATCTGCCGATCGACGAACTGCAGCGCTACAACGTGACGGCGGCCGACCTGCT
GAATCGGCGCTACAGCCCCGCGTTCACCGAATTGATGCAATTCCAGACGGCCCGCGCGCGCGAAGCGCTCGACGCAGCCG
ACGCCGCGATCCCGGCCGCCGAACGCCGCGCGCAGCGCACGCTGCGTGCGCAGATCGCGCTCGCGCGCGCGCTGCTCGAC
GAAATCGAGCGCGACGGCTATCAGGTGCTGCATCAGCGCATCGCGCTGACGCCGATCCGCAAACTGTGGATCGCGTGGCG
CGCCGCGCGCCGTCGCTGA

Upstream 100 bases:

>100_bases
TATTCGGTGGTGCGTGAGGCCGGACTCGAACCGGCACACCCTTGCGGGCGTCAGGACCTAAACCTGGTGCGTCTACCAAT
TTCGCCACTCACGCGGATCC

Downstream 100 bases:

>100_bases
CGCGCCGCGACCGGCATCACGCCTTCAGCAGCGGCAGCGTATCGAAGCGCTGCTGCAGCACGCTCGTGGCATCGAGTCCC
CACCAGGGGCCGAGCACGGT

Product: squalene synthase HpnD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MRRQTARAHRLRPARRGLRPATPAPRSGEREILPDLRGVVSLAGTARSAVLECRARRDGAAARARPSLPPTRICPVNFDD
YCQQKAAPAGSSVYYALRQAPAAVEPRLTALFALRRELEETVKEISDPTVGHTKLAWWHKELAALANGQPSHPVTQALAR
HHPSIAAEADALRTLVNGYGMDLEQARYLDFANLQRYVAQVGGTFAALVARAAAAQPGDPQPWAADVGRALMLAQFVQEL
GNDARHGRIYLPIDELQRYNVTAADLLNRRYSPAFTELMQFQTARAREALDAADAAIPAAERRAQRTLRAQIALARALLD
EIERDGYQVLHQRIALTPIRKLWIAWRAARRR

Sequences:

>Translated_352_residues
MRRQTARAHRLRPARRGLRPATPAPRSGEREILPDLRGVVSLAGTARSAVLECRARRDGAAARARPSLPPTRICPVNFDD
YCQQKAAPAGSSVYYALRQAPAAVEPRLTALFALRRELEETVKEISDPTVGHTKLAWWHKELAALANGQPSHPVTQALAR
HHPSIAAEADALRTLVNGYGMDLEQARYLDFANLQRYVAQVGGTFAALVARAAAAQPGDPQPWAADVGRALMLAQFVQEL
GNDARHGRIYLPIDELQRYNVTAADLLNRRYSPAFTELMQFQTARAREALDAADAAIPAAERRAQRTLRAQIALARALLD
EIERDGYQVLHQRIALTPIRKLWIAWRAARRR
>Mature_352_residues
MRRQTARAHRLRPARRGLRPATPAPRSGEREILPDLRGVVSLAGTARSAVLECRARRDGAAARARPSLPPTRICPVNFDD
YCQQKAAPAGSSVYYALRQAPAAVEPRLTALFALRRELEETVKEISDPTVGHTKLAWWHKELAALANGQPSHPVTQALAR
HHPSIAAEADALRTLVNGYGMDLEQARYLDFANLQRYVAQVGGTFAALVARAAAAQPGDPQPWAADVGRALMLAQFVQEL
GNDARHGRIYLPIDELQRYNVTAADLLNRRYSPAFTELMQFQTARAREALDAADAAIPAAERRAQRTLRAQIALARALLD
EIERDGYQVLHQRIALTPIRKLWIAWRAARRR

Specific function: Catalyzes the reaction from prephytoene diphosphate to phytoene [H]

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phytoene/squalene synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002060
- InterPro:   IPR019845
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00494 SQS_PSY [H]

EC number: =2.5.1.32 [H]

Molecular weight: Translated: 39035; Mature: 39035

Theoretical pI: Translated: 10.95; Mature: 10.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRQTARAHRLRPARRGLRPATPAPRSGEREILPDLRGVVSLAGTARSAVLECRARRDGA
CCCCHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
AARARPSLPPTRICPVNFDDYCQQKAAPAGSSVYYALRQAPAAVEPRLTALFALRRELEE
HHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
TVKEISDPTVGHTKLAWWHKELAALANGQPSHPVTQALARHHPSIAAEADALRTLVNGYG
HHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCC
MDLEQARYLDFANLQRYVAQVGGTFAALVARAAAAQPGDPQPWAADVGRALMLAQFVQEL
CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
GNDARHGRIYLPIDELQRYNVTAADLLNRRYSPAFTELMQFQTARAREALDAADAAIPAA
CCCCCCCEEEEEHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH
ERRAQRTLRAQIALARALLDEIERDGYQVLHQRIALTPIRKLWIAWRAARRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRRQTARAHRLRPARRGLRPATPAPRSGEREILPDLRGVVSLAGTARSAVLECRARRDGA
CCCCHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
AARARPSLPPTRICPVNFDDYCQQKAAPAGSSVYYALRQAPAAVEPRLTALFALRRELEE
HHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
TVKEISDPTVGHTKLAWWHKELAALANGQPSHPVTQALARHHPSIAAEADALRTLVNGYG
HHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCC
MDLEQARYLDFANLQRYVAQVGGTFAALVARAAAAQPGDPQPWAADVGRALMLAQFVQEL
CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
GNDARHGRIYLPIDELQRYNVTAADLLNRRYSPAFTELMQFQTARAREALDAADAAIPAA
CCCCCCCEEEEEHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH
ERRAQRTLRAQIALARALLDEIERDGYQVLHQRIALTPIRKLWIAWRAARRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA