Click here to switch to the map view.

The map label for this gene is yvoA [H]

Identifier: 161524472

GI number: 161524472

Start: 1428041

End: 1428817

Strand: Reverse

Name: yvoA [H]

Synonym: Bmul_1299

Alternate gene names: 161524472

Gene position: 1428817-1428041 (Counterclockwise)

Preceding gene: 161524484

Following gene: 161524471

Centisome position: 41.43

GC content: 65.51

Gene sequence:

>777_bases
ATGCCCGCTCCGAACGTCGTACCGCTGTCGCCGGCCCCGCTCTACGTGCAGATCAAGGACACGCTGCGCGCGCGGATTCT
CGACGGCACCTATGCGCCGCACAGCCGGATGCCGTCCGAACACGAACTCTGCGCGATGTTCGACGTGAGTCGCATCACCG
TACGCCAGGCGCTCGGCGATCTGCAGAAGGAAGGCCTGCTGTTCAAGCTGCACGGCAAGGGCACCTTCGTGTCGAAACCG
AAGGCGTTCCAGAACGTGACGTCGCTGCAGGGCTTTGCCGAAGCGATGTCGTCGATGGGATACGAGATCGTGAACCAGTT
GCGCAGCCTGCGCATCGTCAAGGCCGACCGTCACCTCGCCGCGAAGCTGAACGTACCCGAGCATGCGCCGCTCGTCGAGA
TTCATCGCGTGCGGCTGCTGAACCGCGAACCCGTGTCGCTCGAGCGCACGTGGCTGCCCGAAGCGCTCGGCAAGCGCATC
GCGAGCGCCGATCTCGCGACGCGCGACATCTTCCTGATCCTCGAGAACGACTGCGGCGTGCCGCTCGGCCATGCCGACGT
GGCGATCGACGCGATTCTCGCGGACGACGAGATCGTCGATGCACTGCGCGTCGAAGAAGGCAGCCCCGTGCTGCGCATCG
AGCGGCTCACGCACGACGCGTCGGGCGCGCCGATCGATTACGAACACCTCTACTTCCGAGGCGACGCCTTCCAGTACCGG
CTGCGCATCGACCGGCAGCGGCACAAGGCGCGCAAACCTGCAAGGAATCCGCGATGA

Upstream 100 bases:

>100_bases
CCGCTTTTCCGAAATCGGAAAGTGAAAAGCAGAAATGCTTCGTTGGGCCGCGCGATCGCGCTGACTACACTCGAGCCTTC
TTGTCATAACAAGTCAGCCG

Downstream 100 bases:

>100_bases
ACACCCATGTACTCGAATACGACATCGTCGTGGTCGGCGGCGGCACGGCCGGCCCGATGGCCGCGATCAAGGCGAAGGAA
CGCGACCCGTCGCTGCGCGT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MPAPNVVPLSPAPLYVQIKDTLRARILDGTYAPHSRMPSEHELCAMFDVSRITVRQALGDLQKEGLLFKLHGKGTFVSKP
KAFQNVTSLQGFAEAMSSMGYEIVNQLRSLRIVKADRHLAAKLNVPEHAPLVEIHRVRLLNREPVSLERTWLPEALGKRI
ASADLATRDIFLILENDCGVPLGHADVAIDAILADDEIVDALRVEEGSPVLRIERLTHDASGAPIDYEHLYFRGDAFQYR
LRIDRQRHKARKPARNPR

Sequences:

>Translated_258_residues
MPAPNVVPLSPAPLYVQIKDTLRARILDGTYAPHSRMPSEHELCAMFDVSRITVRQALGDLQKEGLLFKLHGKGTFVSKP
KAFQNVTSLQGFAEAMSSMGYEIVNQLRSLRIVKADRHLAAKLNVPEHAPLVEIHRVRLLNREPVSLERTWLPEALGKRI
ASADLATRDIFLILENDCGVPLGHADVAIDAILADDEIVDALRVEEGSPVLRIERLTHDASGAPIDYEHLYFRGDAFQYR
LRIDRQRHKARKPARNPR
>Mature_257_residues
PAPNVVPLSPAPLYVQIKDTLRARILDGTYAPHSRMPSEHELCAMFDVSRITVRQALGDLQKEGLLFKLHGKGTFVSKPK
AFQNVTSLQGFAEAMSSMGYEIVNQLRSLRIVKADRHLAAKLNVPEHAPLVEIHRVRLLNREPVSLERTWLPEALGKRIA
SADLATRDIFLILENDCGVPLGHADVAIDAILADDEIVDALRVEEGSPVLRIERLTHDASGAPIDYEHLYFRGDAFQYRL
RIDRQRHKARKPARNPR

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082252, Length=236, Percent_Identity=27.9661016949153, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1790118, Length=231, Percent_Identity=27.7056277056277, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1786950, Length=229, Percent_Identity=26.6375545851528, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788418, Length=228, Percent_Identity=24.1228070175439, Blast_Score=81, Evalue=6e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28998; Mature: 28867

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAPNVVPLSPAPLYVQIKDTLRARILDGTYAPHSRMPSEHELCAMFDVSRITVRQALGD
CCCCCEEECCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH
LQKEGLLFKLHGKGTFVSKPKAFQNVTSLQGFAEAMSSMGYEIVNQLRSLRIVKADRHLA
HHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEECCCCEE
AKLNVPEHAPLVEIHRVRLLNREPVSLERTWLPEALGKRIASADLATRDIFLILENDCGV
EECCCCCCCCHHHHHHHHHCCCCCCCCHHHHCHHHHHHHHHHCCCCCCEEEEEEECCCCC
PLGHADVAIDAILADDEIVDALRVEEGSPVLRIERLTHDASGAPIDYEHLYFRGDAFQYR
CCCCHHHEEEEEECCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHEEEEECCEEEEE
LRIDRQRHKARKPARNPR
EEEHHHHHHHCCCCCCCC
>Mature Secondary Structure 
PAPNVVPLSPAPLYVQIKDTLRARILDGTYAPHSRMPSEHELCAMFDVSRITVRQALGD
CCCCEEECCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH
LQKEGLLFKLHGKGTFVSKPKAFQNVTSLQGFAEAMSSMGYEIVNQLRSLRIVKADRHLA
HHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEECCCCEE
AKLNVPEHAPLVEIHRVRLLNREPVSLERTWLPEALGKRIASADLATRDIFLILENDCGV
EECCCCCCCCHHHHHHHHHCCCCCCCCHHHHCHHHHHHHHHHCCCCCCEEEEEEECCCCC
PLGHADVAIDAILADDEIVDALRVEEGSPVLRIERLTHDASGAPIDYEHLYFRGDAFQYR
CCCCHHHEEEEEECCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHEEEEECCEEEEE
LRIDRQRHKARKPARNPR
EEEHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]