Click here to switch to the map view.

The map label for this gene is rraA [C]

Identifier: 161524396

GI number: 161524396

Start: 1345194

End: 1345688

Strand: Direct

Name: rraA [C]

Synonym: Bmul_1223

Alternate gene names: 161524396

Gene position: 1345194-1345688 (Clockwise)

Preceding gene: 161524394

Following gene: 161524397

Centisome position: 39.01

GC content: 71.52

Gene sequence:

>495_bases
ATGACGTTTGCAACAACCGATCTTTGCGACGCCCACGAAGACAAACTGGCCGCCGGCACGCTGCGCGTGCTGCAGCCGGC
CTTGCGGCCGTACGGCGGCGCGGCGCGCTTCGCCGGACCGGCCGCGACGCTGAAGGTGTTCGAGGACAACACGCTCGTGC
GTGCGGCGCTCGAGCAGGACGGCGGCGGCCGCGTGCTCGTCGTCGACGGCGGCGCGAGCCTGCGCTGCGCGCTCGTCGGC
GGCAATCTCGGCGCGCTGGCCGAGAAGAACGGGTGGGCCGGCATCGTCGTGCACGGATGCGTGCGCGATGCGGCCGAACT
GCGCGAATGCAAGGTCGGCGTGCTCGCACTCGCGACGCATCCGCGCAAGAGCGACAAACGCGGCGCAGGCGAGCGCGATG
TGCCGGTCACGGTGCTCGGCACGCGGATCGCGCCGGGCGAATGGATCTACGCGGACGACGACGGCGTGCTCGTGAGCGCG
ACGTCGCTGACCTGA

Upstream 100 bases:

>100_bases
TTGGGTCGATAATGCAGCGTTTCAATGAACTTTGTATGGGCGGGACGGCCTTCGCGTTCACCGTGCCGCAGCGTGCCCCT
CGATCGAAGGAGACGAACCG

Downstream 100 bases:

>100_bases
CCCGACGTGCGACTGCACGCGAATCGCTGAAGGAGAGATCGATGCGCTACGTATTCGTCTACGGCACGCTGAGGGCCGGC
GAGATCAACGACATCGGCCT

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MTFATTDLCDAHEDKLAAGTLRVLQPALRPYGGAARFAGPAATLKVFEDNTLVRAALEQDGGGRVLVVDGGASLRCALVG
GNLGALAEKNGWAGIVVHGCVRDAAELRECKVGVLALATHPRKSDKRGAGERDVPVTVLGTRIAPGEWIYADDDGVLVSA
TSLT

Sequences:

>Translated_164_residues
MTFATTDLCDAHEDKLAAGTLRVLQPALRPYGGAARFAGPAATLKVFEDNTLVRAALEQDGGGRVLVVDGGASLRCALVG
GNLGALAEKNGWAGIVVHGCVRDAAELRECKVGVLALATHPRKSDKRGAGERDVPVTVLGTRIAPGEWIYADDDGVLVSA
TSLT
>Mature_163_residues
TFATTDLCDAHEDKLAAGTLRVLQPALRPYGGAARFAGPAATLKVFEDNTLVRAALEQDGGGRVLVVDGGASLRCALVGG
NLGALAEKNGWAGIVVHGCVRDAAELRECKVGVLALATHPRKSDKRGAGERDVPVTVLGTRIAPGEWIYADDDGVLVSAT
SLT

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family

Homologues:

Organism=Escherichia coli, GI1790364, Length=163, Percent_Identity=41.1042944785276, Blast_Score=126, Evalue=7e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRAAH_BURM1 (A9AHQ6)

Other databases:

- EMBL:   CP000868
- EMBL:   AP009385
- RefSeq:   YP_001579408.1
- RefSeq:   YP_001946477.1
- ProteinModelPortal:   A9AHQ6
- SMR:   A9AHQ6
- GeneID:   5766987
- GeneID:   6358318
- GenomeReviews:   AP009385_GR
- GenomeReviews:   CP000868_GR
- KEGG:   bmj:BMULJ_02024
- KEGG:   bmu:Bmul_1223
- HOGENOM:   HBG668175
- OMA:   NCALLGD
- ProtClustDB:   PRK09372
- InterPro:   IPR005493
- InterPro:   IPR010203
- Gene3D:   G3DSA:3.50.30.40
- TIGRFAMs:   TIGR01935

Pfam domain/function: PF03737 Methyltransf_6; SSF89562 RNaseE_inh/diMeMenaQ_MeTrfase

EC number: NA

Molecular weight: Translated: 16962; Mature: 16831

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFATTDLCDAHEDKLAAGTLRVLQPALRPYGGAARFAGPAATLKVFEDNTLVRAALEQD
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEEECCC
GGGRVLVVDGGASLRCALVGGNLGALAEKNGWAGIVVHGCVRDAAELRECKVGVLALATH
CCCEEEEEECCCCEEEEEEECCCCCEECCCCCEEEEEECHHHHHHHHHHCCCEEEEEEEC
PRKSDKRGAGERDVPVTVLGTRIAPGEWIYADDDGVLVSATSLT
CCCCCCCCCCCCCCCEEEEECEECCCCEEEECCCCEEEEEECCC
>Mature Secondary Structure 
TFATTDLCDAHEDKLAAGTLRVLQPALRPYGGAARFAGPAATLKVFEDNTLVRAALEQD
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEEECCC
GGGRVLVVDGGASLRCALVGGNLGALAEKNGWAGIVVHGCVRDAAELRECKVGVLALATH
CCCEEEEEECCCCEEEEEEECCCCCEECCCCCEEEEEECHHHHHHHHHHCCCEEEEEEEC
PRKSDKRGAGERDVPVTVLGTRIAPGEWIYADDDGVLVSATSLT
CCCCCCCCCCCCCCCEEEEECEECCCCEEEECCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA