| Definition | Burkholderia multivorans ATCC 17616 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010084 |
| Length | 3,448,466 |
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The map label for this gene is ygfF [H]
Identifier: 161524179
GI number: 161524179
Start: 1099663
End: 1100424
Strand: Reverse
Name: ygfF [H]
Synonym: Bmul_1003
Alternate gene names: 161524179
Gene position: 1100424-1099663 (Counterclockwise)
Preceding gene: 161524180
Following gene: 161524178
Centisome position: 31.91
GC content: 72.7
Gene sequence:
>762_bases ATGACCGCACCGTCCGACCGCAAGGCCGTACTCATCACCGGCGCGAGCCGCGGCATCGGCCGCGCGACGGCCGTGCTCGC GGCCGCAAGCGGCTGGGACGTCGGCATCAACTATGCGCGCGACGCGGCAGCGGCCGAACAGACCGCGCAGGCCGTGCGCG ATGCGGGCGGACGCGCGTGCGTCGTCGCCGGCGACGTCGCGAACGAAGCCGACGTCGTCGCGATGTTCGACGCGGTCGCG GCCGCGTTCGGCCGGCTCGACGCGCTCGTCAACAATGCAGGCATCGTCGCGCCGTCGATGCCGCTCGCCGACATGCCGCT CGACCGGCTCACGCGGATGTTCGACACGAACGTGCTCGGTGCCTATCTGTGCGCGCGCGAAGCCGCGCGCCGCCTGTCGA CCGATCGCGGCGGCCGCGGCGGCGCGATCGTCAACGTGTCGTCGATCGCCGCGCGGCTCGGTTCGCCGAACGAATACGTC GACTACGCGGGCTCGAAAGGTGCCGTCGACACGCTGACGGTCGGCCTCGCCAAGGAACTGGGCCCGCATGGCGTGCGCGT CAATGCGGTGCGTCCCGGCCTGATCGAAACCGAGATTCACGCGAGCGGCGGCCAGCCCGGCCGCGCCGCGCGCCTCGGCG CGCAATCGCCGCTCGGCCGCGCCGGCGAAGCGCATGAAGTCGCCGAAGCGATCGTCTGGCTGCTCAGCGACGCCGCGTCG TATACGACCGGCACACTGCTCGACGTCGGCGGCGGCCGGTAG
Upstream 100 bases:
>100_bases GCCGGGCTGATCGACCGGCTGCGCCGCTACCAGCCGCCCGCCCGCGACAAGTGGGCGCAGGACGCCGCGAAATAACCCGT TCCATCCGGAGCCGCACGCG
Downstream 100 bases:
>100_bases GCGCGCTTGCCCGTCGTACCGCGCCCGATAACCGCGCCGCGCGTTGCGGCCCCGATTCGTCACGACACCACAAATCTCCA CAATTCCGTGACAGTTCCGG
Product: glucose-1-dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 253; Mature: 252
Protein sequence:
>253_residues MTAPSDRKAVLITGASRGIGRATAVLAAASGWDVGINYARDAAAAEQTAQAVRDAGGRACVVAGDVANEADVVAMFDAVA AAFGRLDALVNNAGIVAPSMPLADMPLDRLTRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIAARLGSPNEYV DYAGSKGAVDTLTVGLAKELGPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAQSPLGRAGEAHEVAEAIVWLLSDAAS YTTGTLLDVGGGR
Sequences:
>Translated_253_residues MTAPSDRKAVLITGASRGIGRATAVLAAASGWDVGINYARDAAAAEQTAQAVRDAGGRACVVAGDVANEADVVAMFDAVA AAFGRLDALVNNAGIVAPSMPLADMPLDRLTRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIAARLGSPNEYV DYAGSKGAVDTLTVGLAKELGPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAQSPLGRAGEAHEVAEAIVWLLSDAAS YTTGTLLDVGGGR >Mature_252_residues TAPSDRKAVLITGASRGIGRATAVLAAASGWDVGINYARDAAAAEQTAQAVRDAGGRACVVAGDVANEADVVAMFDAVAA AFGRLDALVNNAGIVAPSMPLADMPLDRLTRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIAARLGSPNEYVD YAGSKGAVDTLTVGLAKELGPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAQSPLGRAGEAHEVAEAIVWLLSDAASY TTGTLLDVGGGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=36.3265306122449, Blast_Score=119, Evalue=3e-27, Organism=Homo sapiens, GI7705925, Length=254, Percent_Identity=36.6141732283465, Blast_Score=111, Evalue=6e-25, Organism=Homo sapiens, GI15277342, Length=249, Percent_Identity=32.5301204819277, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI59889578, Length=212, Percent_Identity=34.4339622641509, Blast_Score=94, Evalue=8e-20, Organism=Homo sapiens, GI109715829, Length=248, Percent_Identity=31.0483870967742, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI10190704, Length=252, Percent_Identity=32.5396825396825, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI19923817, Length=254, Percent_Identity=28.740157480315, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI4758504, Length=238, Percent_Identity=30.672268907563, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI32483357, Length=253, Percent_Identity=31.6205533596838, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI209862901, Length=206, Percent_Identity=31.5533980582524, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI19923983, Length=206, Percent_Identity=31.5533980582524, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI31542939, Length=197, Percent_Identity=31.4720812182741, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI40254986, Length=198, Percent_Identity=29.2929292929293, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI66933014, Length=182, Percent_Identity=31.3186813186813, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI2367175, Length=243, Percent_Identity=53.9094650205761, Blast_Score=273, Evalue=7e-75, Organism=Escherichia coli, GI1788459, Length=248, Percent_Identity=36.6935483870968, Blast_Score=144, Evalue=6e-36, Organism=Escherichia coli, GI1789378, Length=253, Percent_Identity=34.7826086956522, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=35.4838709677419, Blast_Score=121, Evalue=6e-29, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=32.7935222672065, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=30.4878048780488, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI2367365, Length=244, Percent_Identity=33.6065573770492, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=29.2, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=28.9156626506024, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1786812, Length=263, Percent_Identity=32.319391634981, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1789057, Length=201, Percent_Identity=30.8457711442786, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=30.5555555555556, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1787891, Length=249, Percent_Identity=29.718875502008, Blast_Score=64, Evalue=8e-12, Organism=Escherichia coli, GI1787526, Length=249, Percent_Identity=24.4979919678715, Blast_Score=61, Evalue=6e-11, Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=38.6454183266932, Blast_Score=137, Evalue=7e-33, Organism=Caenorhabditis elegans, GI71994600, Length=254, Percent_Identity=37.007874015748, Blast_Score=127, Evalue=6e-30, Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=35.7723577235772, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=32.9501915708812, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17560150, Length=258, Percent_Identity=33.3333333333333, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17544670, Length=247, Percent_Identity=33.6032388663968, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562904, Length=242, Percent_Identity=31.404958677686, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI17531453, Length=261, Percent_Identity=32.9501915708812, Blast_Score=100, Evalue=5e-22, Organism=Caenorhabditis elegans, GI193204405, Length=261, Percent_Identity=32.9501915708812, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17565030, Length=258, Percent_Identity=32.1705426356589, Blast_Score=98, Evalue=3e-21, Organism=Caenorhabditis elegans, GI25147288, Length=244, Percent_Identity=34.0163934426229, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=32.3076923076923, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17562910, Length=259, Percent_Identity=32.8185328185328, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=32.824427480916, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17560332, Length=265, Percent_Identity=32.8301886792453, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17563726, Length=239, Percent_Identity=34.7280334728033, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=31.9230769230769, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17555706, Length=245, Percent_Identity=32.2448979591837, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=32.0754716981132, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17551412, Length=262, Percent_Identity=30.1526717557252, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17560676, Length=254, Percent_Identity=32.2834645669291, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17538480, Length=268, Percent_Identity=31.7164179104478, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17536025, Length=257, Percent_Identity=31.5175097276265, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17536651, Length=255, Percent_Identity=31.3725490196078, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17562908, Length=206, Percent_Identity=35.4368932038835, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17538182, Length=252, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17561272, Length=233, Percent_Identity=30.4721030042918, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17560220, Length=261, Percent_Identity=30.2681992337165, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=28.0632411067194, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI71982365, Length=195, Percent_Identity=29.2307692307692, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17564282, Length=254, Percent_Identity=29.5275590551181, Blast_Score=70, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17558628, Length=195, Percent_Identity=31.2820512820513, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17508895, Length=211, Percent_Identity=28.436018957346, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=253, Percent_Identity=29.6442687747036, Blast_Score=84, Evalue=3e-17, Organism=Saccharomyces cerevisiae, GI6323882, Length=234, Percent_Identity=32.0512820512821, Blast_Score=79, Evalue=8e-16, Organism=Saccharomyces cerevisiae, GI6322861, Length=193, Percent_Identity=29.0155440414508, Blast_Score=71, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6322226, Length=200, Percent_Identity=27, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI21357041, Length=257, Percent_Identity=40.0778210116732, Blast_Score=136, Evalue=2e-32, Organism=Drosophila melanogaster, GI28571526, Length=259, Percent_Identity=38.996138996139, Blast_Score=133, Evalue=1e-31, Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=37.3015873015873, Blast_Score=132, Evalue=2e-31, Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=37.0517928286853, Blast_Score=129, Evalue=2e-30, Organism=Drosophila melanogaster, GI24644337, Length=198, Percent_Identity=38.3838383838384, Blast_Score=103, Evalue=8e-23, Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=34, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI24643142, Length=249, Percent_Identity=33.7349397590361, Blast_Score=95, Evalue=5e-20, Organism=Drosophila melanogaster, GI21355319, Length=256, Percent_Identity=32.03125, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI116007236, Length=239, Percent_Identity=30.1255230125523, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI17737361, Length=232, Percent_Identity=30.1724137931034, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24641232, Length=201, Percent_Identity=30.3482587064677, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI28571387, Length=237, Percent_Identity=30.379746835443, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI21357673, Length=205, Percent_Identity=29.7560975609756, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI281364494, Length=201, Percent_Identity=29.3532338308458, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI116007238, Length=184, Percent_Identity=30.4347826086957, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24641388, Length=209, Percent_Identity=33.4928229665072, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24648944, Length=207, Percent_Identity=27.536231884058, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 25618; Mature: 25487
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAPSDRKAVLITGASRGIGRATAVLAAASGWDVGINYARDAAAAEQTAQAVRDAGGRAC CCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE VVAGDVANEADVVAMFDAVAAAFGRLDALVNNAGIVAPSMPLADMPLDRLTRMFDTNVLG EEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH AYLCAREAARRLSTDRGGRGGAIVNVSSIAARLGSPNEYVDYAGSKGAVDTLTVGLAKEL HHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHC GPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAQSPLGRAGEAHEVAEAIVWLLSDAAS CCCCEEEEEECCCEEEEEEECCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH YTTGTLLDVGGGR HCCCCEEECCCCC >Mature Secondary Structure TAPSDRKAVLITGASRGIGRATAVLAAASGWDVGINYARDAAAAEQTAQAVRDAGGRAC CCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE VVAGDVANEADVVAMFDAVAAAFGRLDALVNNAGIVAPSMPLADMPLDRLTRMFDTNVLG EEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH AYLCAREAARRLSTDRGGRGGAIVNVSSIAARLGSPNEYVDYAGSKGAVDTLTVGLAKEL HHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHC GPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAQSPLGRAGEAHEVAEAIVWLLSDAAS CCCCEEEEEECCCEEEEEEECCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH YTTGTLLDVGGGR HCCCCEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503; 7764507 [H]