Click here to switch to the map view.

The map label for this gene is rfaQ [H]

Identifier: 161524141

GI number: 161524141

Start: 1059743

End: 1060921

Strand: Direct

Name: rfaQ [H]

Synonym: Bmul_0965

Alternate gene names: 161524141

Gene position: 1059743-1060921 (Clockwise)

Preceding gene: 161524140

Following gene: 161524142

Centisome position: 30.73

GC content: 61.92

Gene sequence:

>1179_bases
ATGGATGAAGTTTTGGACCTATTTCCCCCCCATCGTCCGCCACGCACGATCCTCGTCGTCTGTACGCGTCGCATCGGCGA
CGTGCTTCTGACGACGCCCCTCGTGCGTTCGTTAAAGGCGCGCTGGCCCCAGGCGCAGATCGACATGCTGGTATTTCGCG
GTACAGGCGGCGTGCTGGAGAACAACCCAGACGTCCGGCGCGTAATTTCGGTCGCGCAACGTACTGGCATCGGCGAACGT
TTCGCCGATGCGGCGCGAATCTGGCGTCGCTATGATCTGGCGTGCGCTGCGATCAGTTCGGATCGTGCGCGGTTCTACTG
CTGGTTTGCCGGCCGCAAGCGAATTGGTCTGTTGGCGCCGGGACGCGCGACGTGGTTCAATCGACGGATGCTCGATCGCC
ACGTGATTGACGACAGTGATTTGCATACCGTCAATAGCGGGCTGCTGTTGGCGCGCTCGCTTGGCATTACCCCGCTCGCC
GACGTGGTACCTCCAGCCGTCGAACGCGATGCAGAGGGGCTCGCGCGTTTCGAACAGCATTTCGACGGCGCCGGTGAGTT
GCAGGGACGTCCATACGTCGTGCTGCATCCGTATCCGATGTACGCATACAAGCTGTGGAGCTTGGATGGGTGGGTGGAAC
TCGCTACCTGGTTACAGGCTCAAGGGTTTGCGATTGCATTGAGTGGCGGACCCGCGCCAGCAGAGCGCAGTTACGCAGAG
CAGATTGCCGCTCGGCTGCCGGGGGTCGTGCTCAATCGAGTCGGCCAGCTTTCGCTCGCGGAAAGTGCTGAGATGATCAG
GCGCGCCCGTCTGTACGTCGGTCCCGATACCAGCGCCACGCACATTGCCGCAGCGACCGGCACGCCGACGCTGGCCCTGT
TCGGTCCGTCCGATCCCGTACGTTGGGGCCCTTGGCCCCATGGCTGGGCCGCCTCGGTCAATCCTTGGCAGCGCAAGGGG
ACTGTTCGTCATGGCAATGTCTATCTATTGCAGGGTGAAGGTAGTTGCGTCCCCTGTCTTAACGAAGGGTGCGAGCGGCG
CGTCGAGAGCCTCAGCGAATGTCTAACGACGCTTGGCGCGGCGCGTGTGATCCGAGCCGCAAGCGAATTATTGGATTTGC
CAGTGTCCGACGCCGTGCCGCGCGTCGATGCAATAGCGAGAGAGAACAAGCATGTTTAG

Upstream 100 bases:

>100_bases
TGCGCGCGACGTTCGGCGGCGGCGCCGTCGAGATCGCGTACTGACCGGTTGAATATGCCGATCCGATTCCCGATGGAGAC
CAGCGGAGCTCCGCCGATTT

Downstream 100 bases:

>100_bases
CATCCTGATCCCGACTTGGAACAATCTGCCGTATCTGAAGTTGTGCATCGACAGCATTCGACGACATTCGGCCTACGAGC
ACGAGATTCTCGTGCACGTG

Product: lipopolysaccharide heptosyltransferase III

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MDEVLDLFPPHRPPRTILVVCTRRIGDVLLTTPLVRSLKARWPQAQIDMLVFRGTGGVLENNPDVRRVISVAQRTGIGER
FADAARIWRRYDLACAAISSDRARFYCWFAGRKRIGLLAPGRATWFNRRMLDRHVIDDSDLHTVNSGLLLARSLGITPLA
DVVPPAVERDAEGLARFEQHFDGAGELQGRPYVVLHPYPMYAYKLWSLDGWVELATWLQAQGFAIALSGGPAPAERSYAE
QIAARLPGVVLNRVGQLSLAESAEMIRRARLYVGPDTSATHIAAATGTPTLALFGPSDPVRWGPWPHGWAASVNPWQRKG
TVRHGNVYLLQGEGSCVPCLNEGCERRVESLSECLTTLGAARVIRAASELLDLPVSDAVPRVDAIARENKHV

Sequences:

>Translated_392_residues
MDEVLDLFPPHRPPRTILVVCTRRIGDVLLTTPLVRSLKARWPQAQIDMLVFRGTGGVLENNPDVRRVISVAQRTGIGER
FADAARIWRRYDLACAAISSDRARFYCWFAGRKRIGLLAPGRATWFNRRMLDRHVIDDSDLHTVNSGLLLARSLGITPLA
DVVPPAVERDAEGLARFEQHFDGAGELQGRPYVVLHPYPMYAYKLWSLDGWVELATWLQAQGFAIALSGGPAPAERSYAE
QIAARLPGVVLNRVGQLSLAESAEMIRRARLYVGPDTSATHIAAATGTPTLALFGPSDPVRWGPWPHGWAASVNPWQRKG
TVRHGNVYLLQGEGSCVPCLNEGCERRVESLSECLTTLGAARVIRAASELLDLPVSDAVPRVDAIARENKHV
>Mature_392_residues
MDEVLDLFPPHRPPRTILVVCTRRIGDVLLTTPLVRSLKARWPQAQIDMLVFRGTGGVLENNPDVRRVISVAQRTGIGER
FADAARIWRRYDLACAAISSDRARFYCWFAGRKRIGLLAPGRATWFNRRMLDRHVIDDSDLHTVNSGLLLARSLGITPLA
DVVPPAVERDAEGLARFEQHFDGAGELQGRPYVVLHPYPMYAYKLWSLDGWVELATWLQAQGFAIALSGGPAPAERSYAE
QIAARLPGVVLNRVGQLSLAESAEMIRRARLYVGPDTSATHIAAATGTPTLALFGPSDPVRWGPWPHGWAASVNPWQRKG
TVRHGNVYLLQGEGSCVPCLNEGCERRVESLSECLTTLGAARVIRAASELLDLPVSDAVPRVDAIARENKHV

Specific function: Catalyzes heptose transfer to the lipopolysaccharide core. It transfers a heptose, called heptose(III), to the heptose(II) of the inner core [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=321, Percent_Identity=25.8566978193146, Blast_Score=106, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011916 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 43197; Mature: 43197

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEVLDLFPPHRPPRTILVVCTRRIGDVLLTTPLVRSLKARWPQAQIDMLVFRGTGGVLE
CCCCHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC
NNPDVRRVISVAQRTGIGERFADAARIWRRYDLACAAISSDRARFYCWFAGRKRIGLLAP
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEECCCCCEEEEEECCCCEEEEECC
GRATWFNRRMLDRHVIDDSDLHTVNSGLLLARSLGITPLADVVPPAVERDAEGLARFEQH
CCHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHH
FDGAGELQGRPYVVLHPYPMYAYKLWSLDGWVELATWLQAQGFAIALSGGPAPAERSYAE
CCCCCCCCCCCEEEEECCCCEEEEEECCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHH
QIAARLPGVVLNRVGQLSLAESAEMIRRARLYVGPDTSATHIAAATGTPTLALFGPSDPV
HHHHHCCHHHHHHCCCHHHHHHHHHHHHHHEEECCCCCCCEEEEECCCCEEEEECCCCCC
RWGPWPHGWAASVNPWQRKGTVRHGNVYLLQGEGSCVPCLNEGCERRVESLSECLTTLGA
CCCCCCCCCCCCCCCHHHCCCEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ARVIRAASELLDLPVSDAVPRVDAIARENKHV
HHHHHHHHHHHCCCCHHCCCHHHHHHHCCCCC
>Mature Secondary Structure
MDEVLDLFPPHRPPRTILVVCTRRIGDVLLTTPLVRSLKARWPQAQIDMLVFRGTGGVLE
CCCCHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC
NNPDVRRVISVAQRTGIGERFADAARIWRRYDLACAAISSDRARFYCWFAGRKRIGLLAP
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEECCCCCEEEEEECCCCEEEEECC
GRATWFNRRMLDRHVIDDSDLHTVNSGLLLARSLGITPLADVVPPAVERDAEGLARFEQH
CCHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHH
FDGAGELQGRPYVVLHPYPMYAYKLWSLDGWVELATWLQAQGFAIALSGGPAPAERSYAE
CCCCCCCCCCCEEEEECCCCEEEEEECCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHH
QIAARLPGVVLNRVGQLSLAESAEMIRRARLYVGPDTSATHIAAATGTPTLALFGPSDPV
HHHHHCCHHHHHHCCCHHHHHHHHHHHHHHEEECCCCCCCEEEEECCCCEEEEECCCCCC
RWGPWPHGWAASVNPWQRKGTVRHGNVYLLQGEGSCVPCLNEGCERRVESLSECLTTLGA
CCCCCCCCCCCCCCCHHHCCCEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ARVIRAASELLDLPVSDAVPRVDAIARENKHV
HHHHHHHHHHHCCCCHHCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA