Click here to switch to the map view.

The map label for this gene is ydfD [H]

Identifier: 161524107

GI number: 161524107

Start: 1019257

End: 1020717

Strand: Direct

Name: ydfD [H]

Synonym: Bmul_0931

Alternate gene names: 161524107

Gene position: 1019257-1020717 (Clockwise)

Preceding gene: 161524099

Following gene: 161524108

Centisome position: 29.56

GC content: 69.34

Gene sequence:

>1461_bases
ATGTCCTCCGTTCCGCTCGCACAGATTCCCGCCCCGCACGACACCGCCACGCTGACGCTCGTCGACCAGCTCGTCCAGTG
GGCGCGCCGCCGCATCGACGAACGCGTGTTCCGGCCCGGCATGCGCATGCCGTCGATCCGCAAGCTCGCGCTCGACAAGA
GCGTGTCGCGCTTTACCGTCGTCGAAGCGTACGAGCGCCTCGTCGCGCAGGGCTATCTCGATTCGCGGCGCGGCTCGGGC
TTCTACGTGCGCGAGCGCACGGCCGGCCCGCAGCCCGTCGCCGACGGCGCGACGCGCGGCGCCGAAGCGACGCCCGTGCA
CAACACGATCGACGTCGTCTGGCTGCTGCGCAACATGCTGCATACGGTCAGCCCGGAAAAGGGGCCCGGTCTCGGCTACC
TGCCGGGACGCTGGCTCGACGGCGAGCTGATCACAGGCGCGTTGCGCGCGCTCGGGCGCCAGTCGGGCGCGCAGATGCTC
GGCTTCGGCACCGCGCAGGGCTTCCTGCCGCTGCGTCAGCAACTGCAGACGCGGCTCGCGGAAGTCGAGATCGGCGCGAC
GCCCGAGCAGATCGTGATGGTCTCGGGCATCACGCAGGCGATCGACCTGATCGCGCGGATCTACGTGCGGCCCGGCGACG
CGGTGATCGTCGGCGATCCCGCGTGGTTCCAGATGTTCGGCCGCTTCGCGTCGCAGGGCGCGCAGCTCGTCGGCATGCCC
TATACGCCCGACGGTCCGGATCTCGACGCGCTCGAGACGCTCGTGCAGATGTGGCGCCCGAAGATGCTCGTGATCAATTC
GGTGCTGCAGAACCCGACCGGCACGTCGCTGTCGGCCGCGCAGGCGTTCCGGATCCTGAAACTCGCGGAGCAGTACGACT
TCCTCGTCGTCGAGGACGACGTGTACGGCGACCTGTGCCCGCCGAGCTATCCGGCCACGCGGCTCGCGAGCCTCGATCAG
TTGAAGCGCGTGATCTATCTCGGCAGCTATTCGAAGACGCTTGCCGCGAACCTGCGCGTCGGCTACGTCGCGTGCGCGCC
CGAAATCGCGAAGGCGATCACCGATCAGAAGATGCTGGTCGGCATGACGACGCCCGAGCTGAACGAGCGCGTGCTGTACA
AGATCCTGACCGAAGGCCACTACCGGCGGCACGTCGAGCGGCTGCGCGCGCGGCTCGACGGCGTGCGCGACAAGACCGCG
CGGATGCTCGAGCGCACCGGCCTGAAGCTGTTCGCGATGCCGGCGGCCGGCATGTTCCTCTGGGCCGACACGGGCGTCGA
CTCGGACGCGCTCGCGGCCGCCGCGCACGAGGAAGGCTTTCTGCTGACGCCGGGCAGCCTGTTCTCGCCGCAGCAGTCGC
CGTCGACGTGGACACGCTTCAACGTCGCGAACTGCGGCGATCCGGCGCTGCCGGGGTTTCTCGCGCGCTATATCGAATCG
GCGACGCGGCGCGCGTCGTGA

Upstream 100 bases:

>100_bases
GTCGCGAACGGCCGGTTGTCGATCAACTGTAATCGTGCGCACCGGCACAGTAACGGTACAATCGGCGCGATACCCTTCGG
TACAGTTGGAGCCGCCGCCC

Downstream 100 bases:

>100_bases
CGCGGCCGGCCGTGCCGGCTCTTGAAATCGGCGCAGCCGTCCCCATCTGCGCGCGCAAACCGCTTGCGCCAGGCGGTTGT
CCCTAGACGGGCCGGCCGGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 486; Mature: 485

Protein sequence:

>486_residues
MSSVPLAQIPAPHDTATLTLVDQLVQWARRRIDERVFRPGMRMPSIRKLALDKSVSRFTVVEAYERLVAQGYLDSRRGSG
FYVRERTAGPQPVADGATRGAEATPVHNTIDVVWLLRNMLHTVSPEKGPGLGYLPGRWLDGELITGALRALGRQSGAQML
GFGTAQGFLPLRQQLQTRLAEVEIGATPEQIVMVSGITQAIDLIARIYVRPGDAVIVGDPAWFQMFGRFASQGAQLVGMP
YTPDGPDLDALETLVQMWRPKMLVINSVLQNPTGTSLSAAQAFRILKLAEQYDFLVVEDDVYGDLCPPSYPATRLASLDQ
LKRVIYLGSYSKTLAANLRVGYVACAPEIAKAITDQKMLVGMTTPELNERVLYKILTEGHYRRHVERLRARLDGVRDKTA
RMLERTGLKLFAMPAAGMFLWADTGVDSDALAAAAHEEGFLLTPGSLFSPQQSPSTWTRFNVANCGDPALPGFLARYIES
ATRRAS

Sequences:

>Translated_486_residues
MSSVPLAQIPAPHDTATLTLVDQLVQWARRRIDERVFRPGMRMPSIRKLALDKSVSRFTVVEAYERLVAQGYLDSRRGSG
FYVRERTAGPQPVADGATRGAEATPVHNTIDVVWLLRNMLHTVSPEKGPGLGYLPGRWLDGELITGALRALGRQSGAQML
GFGTAQGFLPLRQQLQTRLAEVEIGATPEQIVMVSGITQAIDLIARIYVRPGDAVIVGDPAWFQMFGRFASQGAQLVGMP
YTPDGPDLDALETLVQMWRPKMLVINSVLQNPTGTSLSAAQAFRILKLAEQYDFLVVEDDVYGDLCPPSYPATRLASLDQ
LKRVIYLGSYSKTLAANLRVGYVACAPEIAKAITDQKMLVGMTTPELNERVLYKILTEGHYRRHVERLRARLDGVRDKTA
RMLERTGLKLFAMPAAGMFLWADTGVDSDALAAAAHEEGFLLTPGSLFSPQQSPSTWTRFNVANCGDPALPGFLARYIES
ATRRAS
>Mature_485_residues
SSVPLAQIPAPHDTATLTLVDQLVQWARRRIDERVFRPGMRMPSIRKLALDKSVSRFTVVEAYERLVAQGYLDSRRGSGF
YVRERTAGPQPVADGATRGAEATPVHNTIDVVWLLRNMLHTVSPEKGPGLGYLPGRWLDGELITGALRALGRQSGAQMLG
FGTAQGFLPLRQQLQTRLAEVEIGATPEQIVMVSGITQAIDLIARIYVRPGDAVIVGDPAWFQMFGRFASQGAQLVGMPY
TPDGPDLDALETLVQMWRPKMLVINSVLQNPTGTSLSAAQAFRILKLAEQYDFLVVEDDVYGDLCPPSYPATRLASLDQL
KRVIYLGSYSKTLAANLRVGYVACAPEIAKAITDQKMLVGMTTPELNERVLYKILTEGHYRRHVERLRARLDGVRDKTAR
MLERTGLKLFAMPAAGMFLWADTGVDSDALAAAAHEEGFLLTPGSLFSPQQSPSTWTRFNVANCGDPALPGFLARYIESA
TRRAS

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=312, Percent_Identity=26.2820512820513, Blast_Score=102, Evalue=6e-22,
Organism=Homo sapiens, GI33469970, Length=312, Percent_Identity=26.2820512820513, Blast_Score=102, Evalue=6e-22,
Organism=Escherichia coli, GI1787710, Length=458, Percent_Identity=27.5109170305677, Blast_Score=138, Evalue=9e-34,
Organism=Escherichia coli, GI1790797, Length=459, Percent_Identity=25.9259259259259, Blast_Score=136, Evalue=4e-33,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53414; Mature: 53283

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSVPLAQIPAPHDTATLTLVDQLVQWARRRIDERVFRPGMRMPSIRKLALDKSVSRFTV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHH
VEAYERLVAQGYLDSRRGSGFYVRERTAGPQPVADGATRGAEATPVHNTIDVVWLLRNML
HHHHHHHHHHCCHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
HTVSPEKGPGLGYLPGRWLDGELITGALRALGRQSGAQMLGFGTAQGFLPLRQQLQTRLA
HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHH
EVEIGATPEQIVMVSGITQAIDLIARIYVRPGDAVIVGDPAWFQMFGRFASQGAQLVGMP
HEECCCCHHHEEEEHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHCCCEEEECC
YTPDGPDLDALETLVQMWRPKMLVINSVLQNPTGTSLSAAQAFRILKLAEQYDFLVVEDD
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEECC
VYGDLCPPSYPATRLASLDQLKRVIYLGSYSKTLAANLRVGYVACAPEIAKAITDQKMLV
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCEEEEEECCHHHHHHHCCCCEEE
GMTTPELNERVLYKILTEGHYRRHVERLRARLDGVRDKTARMLERTGLKLFAMPAAGMFL
ECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEECCCCEEE
WADTGVDSDALAAAAHEEGFLLTPGSLFSPQQSPSTWTRFNVANCGDPALPGFLARYIES
EECCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
ATRRAS
HHHCCC
>Mature Secondary Structure 
SSVPLAQIPAPHDTATLTLVDQLVQWARRRIDERVFRPGMRMPSIRKLALDKSVSRFTV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHH
VEAYERLVAQGYLDSRRGSGFYVRERTAGPQPVADGATRGAEATPVHNTIDVVWLLRNML
HHHHHHHHHHCCHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
HTVSPEKGPGLGYLPGRWLDGELITGALRALGRQSGAQMLGFGTAQGFLPLRQQLQTRLA
HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHH
EVEIGATPEQIVMVSGITQAIDLIARIYVRPGDAVIVGDPAWFQMFGRFASQGAQLVGMP
HEECCCCHHHEEEEHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHCCCEEEECC
YTPDGPDLDALETLVQMWRPKMLVINSVLQNPTGTSLSAAQAFRILKLAEQYDFLVVEDD
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEECC
VYGDLCPPSYPATRLASLDQLKRVIYLGSYSKTLAANLRVGYVACAPEIAKAITDQKMLV
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCEEEEEECCHHHHHHHCCCCEEE
GMTTPELNERVLYKILTEGHYRRHVERLRARLDGVRDKTARMLERTGLKLFAMPAAGMFL
ECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEECCCCEEE
WADTGVDSDALAAAAHEEGFLLTPGSLFSPQQSPSTWTRFNVANCGDPALPGFLARYIES
EECCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
ATRRAS
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]