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The map label for this gene is yahB [H]

Identifier: 161524098

GI number: 161524098

Start: 1009209

End: 1010093

Strand: Reverse

Name: yahB [H]

Synonym: Bmul_0922

Alternate gene names: 161524098

Gene position: 1010093-1009209 (Counterclockwise)

Preceding gene: 161524100

Following gene: 161524092

Centisome position: 29.29

GC content: 69.72

Gene sequence:

>885_bases
ATGCGCCATCCGCCCGAAGCCCTCGTCGCGTTCGCCGAAGCGGCGCAGCTCGGCTCGTTCACGGCCGCCGCGAAGAAGCT
CGGCAAGCGGCAGTCGACGGTGTCCGAAGCGATCGCCAATCTCGAGATCGATCTCGGCGTGCAGCTGTTCGACCGCTCGA
CGCGCTCACCGACGCTGACCGACGCCGGCCGCGCGCTGCTGCCGCACGTGCAGCGCACGCTCGAGGCCGGTGCCGCGATC
GATCGCGTCGCCGCGCGGCTCGCGCACGGCGAGGAAGCGCGGCTGACGCTCGTCGTGTCCGACACGTATCAGTCGAAGCG
CTACGAAGAAACGCTGACCGCGCTCGAACAGCGGTTTCCGGCACTCGAGCTCGAATGCCAGATCGCCGAGCACGACGACG
TGCTGGACCTGATCCAGCAAGGGCGCGCGCAACTCGGGCTGATGGCCGCGCGCGCGAGCTACCCGCCCGACATCGGCGCG
GCAACGGTGGCGGAGGAATCGGAAATCGGACTGTTCGTCGGCCGCACGCATCCGCTCGCCGACTACCGCGATGCCGAAGT
GCCGCATGCGGTGCTACGCGATGCGCGCGAGCTGCGGCTCAATACGTACGTGATGCCCGAAGGCCGCAGCAGCGATCACC
GGATCGTCGTCGGCACGCAGCGCTGGCTCGCGCCGAGCTATCTGATGCTGCTGGAAATGGCGGTGCTGGGATTCGGCTGG
GCCGAACTGCCGCGCTGGATGGTCGAGCATTTCGCGCGCGACCGGCTGTGCGAACTGCGTGCGCGCGGCTGGCCGCGCCG
CGTACGCGTCGATGCGGTGTGGTCGCGCAATCGGCCGCTCGGGCCGGCCGGCTCGTGGCTGCTCGACGCGATGCTCGCTG
CATAG

Upstream 100 bases:

>100_bases
GATTGTGTTTCGTCGATGGGGTGCATTTTGATCGGCAGATACGGATACATCCAGTTTGATATCATCGGTTTTACCGATAT
ATCAACGACAGGACAGTCCG

Downstream 100 bases:

>100_bases
CGCGGCGTCGCGTGCAGCTCGCGCGTGCGCGTTGCGTTCAGAAGCCGCGCGACAGCACGGCGGCGCCGATCGTCACGACG
CCGAGCACGAGATTGACGAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MRHPPEALVAFAEAAQLGSFTAAAKKLGKRQSTVSEAIANLEIDLGVQLFDRSTRSPTLTDAGRALLPHVQRTLEAGAAI
DRVAARLAHGEEARLTLVVSDTYQSKRYEETLTALEQRFPALELECQIAEHDDVLDLIQQGRAQLGLMAARASYPPDIGA
ATVAEESEIGLFVGRTHPLADYRDAEVPHAVLRDARELRLNTYVMPEGRSSDHRIVVGTQRWLAPSYLMLLEMAVLGFGW
AELPRWMVEHFARDRLCELRARGWPRRVRVDAVWSRNRPLGPAGSWLLDAMLAA

Sequences:

>Translated_294_residues
MRHPPEALVAFAEAAQLGSFTAAAKKLGKRQSTVSEAIANLEIDLGVQLFDRSTRSPTLTDAGRALLPHVQRTLEAGAAI
DRVAARLAHGEEARLTLVVSDTYQSKRYEETLTALEQRFPALELECQIAEHDDVLDLIQQGRAQLGLMAARASYPPDIGA
ATVAEESEIGLFVGRTHPLADYRDAEVPHAVLRDARELRLNTYVMPEGRSSDHRIVVGTQRWLAPSYLMLLEMAVLGFGW
AELPRWMVEHFARDRLCELRARGWPRRVRVDAVWSRNRPLGPAGSWLLDAMLAA
>Mature_294_residues
MRHPPEALVAFAEAAQLGSFTAAAKKLGKRQSTVSEAIANLEIDLGVQLFDRSTRSPTLTDAGRALLPHVQRTLEAGAAI
DRVAARLAHGEEARLTLVVSDTYQSKRYEETLTALEQRFPALELECQIAEHDDVLDLIQQGRAQLGLMAARASYPPDIGA
ATVAEESEIGLFVGRTHPLADYRDAEVPHAVLRDARELRLNTYVMPEGRSSDHRIVVGTQRWLAPSYLMLLEMAVLGFGW
AELPRWMVEHFARDRLCELRARGWPRRVRVDAVWSRNRPLGPAGSWLLDAMLAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786508, Length=291, Percent_Identity=26.8041237113402, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI157672245, Length=170, Percent_Identity=31.7647058823529, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788481, Length=176, Percent_Identity=28.4090909090909, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786713, Length=117, Percent_Identity=35.042735042735, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87082024, Length=237, Percent_Identity=25.3164556962025, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788296, Length=148, Percent_Identity=29.7297297297297, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788748, Length=148, Percent_Identity=27.7027027027027, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32647; Mature: 32647

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHPPEALVAFAEAAQLGSFTAAAKKLGKRQSTVSEAIANLEIDLGVQLFDRSTRSPTLT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEECCCCCCCCCC
DAGRALLPHVQRTLEAGAAIDRVAARLAHGEEARLTLVVSDTYQSKRYEETLTALEQRFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCC
ALELECQIAEHDDVLDLIQQGRAQLGLMAARASYPPDIGAATVAEESEIGLFVGRTHPLA
CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCEEEEECCCCCC
DYRDAEVPHAVLRDARELRLNTYVMPEGRSSDHRIVVGTQRWLAPSYLMLLEMAVLGFGW
CCCCCCCCHHHHHHHHHHHHHEEECCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCH
AELPRWMVEHFARDRLCELRARGWPRRVRVDAVWSRNRPLGPAGSWLLDAMLAA
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MRHPPEALVAFAEAAQLGSFTAAAKKLGKRQSTVSEAIANLEIDLGVQLFDRSTRSPTLT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEECCCCCCCCCC
DAGRALLPHVQRTLEAGAAIDRVAARLAHGEEARLTLVVSDTYQSKRYEETLTALEQRFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCC
ALELECQIAEHDDVLDLIQQGRAQLGLMAARASYPPDIGAATVAEESEIGLFVGRTHPLA
CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCEEEEECCCCCC
DYRDAEVPHAVLRDARELRLNTYVMPEGRSSDHRIVVGTQRWLAPSYLMLLEMAVLGFGW
CCCCCCCCHHHHHHHHHHHHHEEECCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCH
AELPRWMVEHFARDRLCELRARGWPRRVRVDAVWSRNRPLGPAGSWLLDAMLAA
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]