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The map label for this gene is yhjC [H]

Identifier: 161523992

GI number: 161523992

Start: 888670

End: 889599

Strand: Direct

Name: yhjC [H]

Synonym: Bmul_0812

Alternate gene names: 161523992

Gene position: 888670-889599 (Clockwise)

Preceding gene: 161523991

Following gene: 161523994

Centisome position: 25.77

GC content: 70.43

Gene sequence:

>930_bases
ATGGACAAGCTCGATCAGGTCAGGATCTTCCTTCAGGTTGCCGAGATGGGCAGCTTCATCAAGGCGGCGCACGCGCTCGA
CGTGCCGCGCGCGACGGTGTCGGCGGCCGTCCAGCAGCTCGAGGCGGCGCTCGGCACGCGCCTGCTGCATCGCACGACGC
GGCAGGTGCAGCTGACTGCCGACGGCACGGTGCTGCTCGAGCGCGGCCGGCGGCTGCTGGCCGAAGCCGACGAACTCGAC
CGGCTGTTCCGGCGGCGCGACCGCGACGTGATCGGCCGGCTGAACGTCGACGTGCCGAGCCGGATCGCGCGGCGCGTAAT
CGCGCCCGCGCTGCCGGCGCTGTTTCGCCGCCATCCGAAGCTGCAGCTGTCGCTCGGCTCGACCGACCGGTCGATCGACC
TCGTGCAGGAGGGCGTCGACTGCGCGATTCGCGTCGGGCGGCTCGCGGACAGCAGCCTCGTCGTGCGCCCGCTCGGGCAG
TTCGCGCTGATCAACTGCGCGAGCCCCGACTATCTGCGCGAGCACGGCGTGCCCGAGCATCCGGACGCGCTCGCGCACGG
ACACTGGGCGATCGGCTATGCGTCGCCGACGACCGGGCGCGAGCTCGACTGGGAGTACGTCACGGACGCGGGCCGGCACA
CGCTGACGCTGCCGAGCCGCGTCGTCGTGAACAACGCGGAAACGTATATCGCGAGCTGCATCGCCGGGATGGGGCTGATC
CAGATCCCGCGTTTCGACGTCGCGCATCTGCTCGAGAGCGGCGCGCTCGTCGAAGTGATGCGCGCGCATCGGCCCGCGCC
GATGGATGTCTCGGCCGTGTATCCGCATCGCCGCCATCGGTCGCGGCGGCTCAACGCGTTCGTCGAATGGTTCGGCGAAT
TGATGGCCGATGCGCTGACGGAGCGTGTCGCCGACGCGGATCGCGACTGA

Upstream 100 bases:

>100_bases
CGGCCGCGCCGTACTGGGCGGTTTGCGTGGACAATCGAGAGGCGTGCGGGCATGCCCGTGCGCCTTTTTCGTTTTCGGCG
CCGGCGGCGCACGCAGCCAC

Downstream 100 bases:

>100_bases
CGGCGCGGTACGGCACGATCCGGCACGACCGCGATCGATTCCCGCGACAACACGCGCGCCGCATCGCGCCATTCAGCGCG
GCATGGCCGCGAACTGCCGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MDKLDQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLEAALGTRLLHRTTRQVQLTADGTVLLERGRRLLAEADELD
RLFRRRDRDVIGRLNVDVPSRIARRVIAPALPALFRRHPKLQLSLGSTDRSIDLVQEGVDCAIRVGRLADSSLVVRPLGQ
FALINCASPDYLREHGVPEHPDALAHGHWAIGYASPTTGRELDWEYVTDAGRHTLTLPSRVVVNNAETYIASCIAGMGLI
QIPRFDVAHLLESGALVEVMRAHRPAPMDVSAVYPHRRHRSRRLNAFVEWFGELMADALTERVADADRD

Sequences:

>Translated_309_residues
MDKLDQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLEAALGTRLLHRTTRQVQLTADGTVLLERGRRLLAEADELD
RLFRRRDRDVIGRLNVDVPSRIARRVIAPALPALFRRHPKLQLSLGSTDRSIDLVQEGVDCAIRVGRLADSSLVVRPLGQ
FALINCASPDYLREHGVPEHPDALAHGHWAIGYASPTTGRELDWEYVTDAGRHTLTLPSRVVVNNAETYIASCIAGMGLI
QIPRFDVAHLLESGALVEVMRAHRPAPMDVSAVYPHRRHRSRRLNAFVEWFGELMADALTERVADADRD
>Mature_309_residues
MDKLDQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLEAALGTRLLHRTTRQVQLTADGTVLLERGRRLLAEADELD
RLFRRRDRDVIGRLNVDVPSRIARRVIAPALPALFRRHPKLQLSLGSTDRSIDLVQEGVDCAIRVGRLADSSLVVRPLGQ
FALINCASPDYLREHGVPEHPDALAHGHWAIGYASPTTGRELDWEYVTDAGRHTLTLPSRVVVNNAETYIASCIAGMGLI
QIPRFDVAHLLESGALVEVMRAHRPAPMDVSAVYPHRRHRSRRLNAFVEWFGELMADALTERVADADRD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=299, Percent_Identity=38.4615384615385, Blast_Score=236, Evalue=1e-63,
Organism=Escherichia coli, GI1789639, Length=299, Percent_Identity=29.0969899665552, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=32.9896907216495, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI87081978, Length=301, Percent_Identity=32.5581395348837, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1789440, Length=290, Percent_Identity=27.9310344827586, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1787128, Length=286, Percent_Identity=25.5244755244755, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787589, Length=281, Percent_Identity=26.6903914590747, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1790011, Length=290, Percent_Identity=23.448275862069, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1786713, Length=323, Percent_Identity=27.8637770897833, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788706, Length=188, Percent_Identity=27.1276595744681, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788481, Length=295, Percent_Identity=24.7457627118644, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789173, Length=255, Percent_Identity=25.8823529411765, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786448, Length=290, Percent_Identity=23.448275862069, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34381; Mature: 34381

Theoretical pI: Translated: 8.15; Mature: 8.15

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLDQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLEAALGTRLLHRTTRQVQLTA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC
DGTVLLERGRRLLAEADELDRLFRRRDRDVIGRLNVDVPSRIARRVIAPALPALFRRHPK
CCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC
LQLSLGSTDRSIDLVQEGVDCAIRVGRLADSSLVVRPLGQFALINCASPDYLREHGVPEH
EEEEECCCCCHHHHHHHCHHHHHHHCCCCCCCHHHHCCCCEEEEECCCCHHHHHCCCCCC
PDALAHGHWAIGYASPTTGRELDWEYVTDAGRHTLTLPSRVVVNNAETYIASCIAGMGLI
CCHHCCCCEEEEECCCCCCCCCCHHHHHCCCCEEEECCCEEEECCHHHHHHHHHHCCCEE
QIPRFDVAHLLESGALVEVMRAHRPAPMDVSAVYPHRRHRSRRLNAFVEWFGELMADALT
ECCCHHHHHHHHCCHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ERVADADRD
HHHHCCCCC
>Mature Secondary Structure
MDKLDQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLEAALGTRLLHRTTRQVQLTA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC
DGTVLLERGRRLLAEADELDRLFRRRDRDVIGRLNVDVPSRIARRVIAPALPALFRRHPK
CCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC
LQLSLGSTDRSIDLVQEGVDCAIRVGRLADSSLVVRPLGQFALINCASPDYLREHGVPEH
EEEEECCCCCHHHHHHHCHHHHHHHCCCCCCCHHHHCCCCEEEEECCCCHHHHHCCCCCC
PDALAHGHWAIGYASPTTGRELDWEYVTDAGRHTLTLPSRVVVNNAETYIASCIAGMGLI
CCHHCCCCEEEEECCCCCCCCCCHHHHHCCCCEEEECCCEEEECCHHHHHHHHHHCCCEE
QIPRFDVAHLLESGALVEVMRAHRPAPMDVSAVYPHRRHRSRRLNAFVEWFGELMADALT
ECCCHHHHHHHHCCHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ERVADADRD
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]