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The map label for this gene is xerD [C]

Identifier: 161523680

GI number: 161523680

Start: 548844

End: 549410

Strand: Direct

Name: xerD [C]

Synonym: Bmul_0500

Alternate gene names: 161523680

Gene position: 548844-549410 (Clockwise)

Preceding gene: 161523678

Following gene: 161523682

Centisome position: 15.92

GC content: 57.32

Gene sequence:

>567_bases
ATGAAGCAGGCCAAGACATTTACGGAAAAGGAGCTCAAACAGGTACTGACCTATGTGTCGCTGCGGCGGCATGCGTTGCG
TAATCGAGCGATGGTGCTGCTGACGCACTGGGCTGGCATGCGTGTCGGCGAAGTCGCTGCATTGCTTGTGGGCGATGTGC
TTGATACAGATGGTTCGATCAAGTCAGAAATTCGACTTGCGCCAGAACAGACCAAGGGCCGACATGCGCGCACGGTTTTC
CTCGGGCAGAAATTGCGGCGCGAACTGGCCGCGTATGTTGCGAGCTTGAATAACCCGACGCTTGACGGCCCGCTGTTTTA
TACGCAGAAGCGGGCGGGGTTCACGGCCAATACGCTTTGCCAGTACTTCCACTGGCTCTATAAGGAAGCGGGCATCCACG
GCGCGAGCAGCCATTCAGGTCGACGCTCGTTCATCACGAATCTTGCAAGCAAGGGCGTCGGCGTCCGCGTGTTGATGTCG
CTCGCAGGGCATCGAGATATCTCGACTACGCAGCGATACATCGACGTGAACGACGACATGCAACGCAAGGCCGTGGACCT
AGTCTGA

Upstream 100 bases:

>100_bases
GCTTGTTTCCTCTGACATCAGCGCGATGTCATTCCTTTGTTGATCCGTATAACTAAAGAATACATCCTCTCGACATGGAT
TTTGTTTGTTCGGGGGAGAA

Downstream 100 bases:

>100_bases
TGAGTCGATACAGCTCCGCTCAGATAGAAGCACGCCGCTGGTTTGCGCTCGCGTTCAGTCGCGAGAACAGGCCTGACTTG
ACGCACGTACTCGGCAACGG

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MKQAKTFTEKELKQVLTYVSLRRHALRNRAMVLLTHWAGMRVGEVAALLVGDVLDTDGSIKSEIRLAPEQTKGRHARTVF
LGQKLRRELAAYVASLNNPTLDGPLFYTQKRAGFTANTLCQYFHWLYKEAGIHGASSHSGRRSFITNLASKGVGVRVLMS
LAGHRDISTTQRYIDVNDDMQRKAVDLV

Sequences:

>Translated_188_residues
MKQAKTFTEKELKQVLTYVSLRRHALRNRAMVLLTHWAGMRVGEVAALLVGDVLDTDGSIKSEIRLAPEQTKGRHARTVF
LGQKLRRELAAYVASLNNPTLDGPLFYTQKRAGFTANTLCQYFHWLYKEAGIHGASSHSGRRSFITNLASKGVGVRVLMS
LAGHRDISTTQRYIDVNDDMQRKAVDLV
>Mature_188_residues
MKQAKTFTEKELKQVLTYVSLRRHALRNRAMVLLTHWAGMRVGEVAALLVGDVLDTDGSIKSEIRLAPEQTKGRHARTVF
LGQKLRRELAAYVASLNNPTLDGPLFYTQKRAGFTANTLCQYFHWLYKEAGIHGASSHSGRRSFITNLASKGVGVRVLMS
LAGHRDISTTQRYIDVNDDMQRKAVDLV

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules [H]

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 21085; Mature: 21085

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQAKTFTEKELKQVLTYVSLRRHALRNRAMVLLTHWAGMRVGEVAALLVGDVLDTDGSI
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHCCCCHHHHHHHHHHHHHCCCCCC
KSEIRLAPEQTKGRHARTVFLGQKLRRELAAYVASLNNPTLDGPLFYTQKRAGFTANTLC
HHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHCCCCCHHHHH
QYFHWLYKEAGIHGASSHSGRRSFITNLASKGVGVRVLMSLAGHRDISTTQRYIDVNDDM
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHEECCCCHH
QRKAVDLV
HHHHHCCC
>Mature Secondary Structure
MKQAKTFTEKELKQVLTYVSLRRHALRNRAMVLLTHWAGMRVGEVAALLVGDVLDTDGSI
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHCCCCHHHHHHHHHHHHHCCCCCC
KSEIRLAPEQTKGRHARTVFLGQKLRRELAAYVASLNNPTLDGPLFYTQKRAGFTANTLC
HHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHCCCCCHHHHH
QYFHWLYKEAGIHGASSHSGRRSFITNLASKGVGVRVLMSLAGHRDISTTQRYIDVNDDM
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHEECCCCHH
QRKAVDLV
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA