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The map label for this gene is rci [H]

Identifier: 161523675

GI number: 161523675

Start: 541878

End: 542864

Strand: Direct

Name: rci [H]

Synonym: Bmul_0495

Alternate gene names: 161523675

Gene position: 541878-542864 (Clockwise)

Preceding gene: 161523674

Following gene: 161523676

Centisome position: 15.71

GC content: 56.53

Gene sequence:

>987_bases
ATGGCGACATTCAGTCAGCGTAACGGACGCTGGCAAGTCAAAATTAATCGCAAGGGATTTCCTACGCAGTACAGATCATT
TGCGACGAAGGCAGAAGGCCAAGTCTGGGCGCGTTCCGTCGAAACGGCGATGGACGACGGAACGTGGGTCGATCCGGCAG
GCACGACCGACGTCACCTTCGGAAAACTGCTGGAGCGTTACAGAGAATCCATTACGCCGACAAAGCGTAGCAGGCGCAGC
GAAGAATATCGGATCGGCAAAATGCTGCGCCACAAGATCGCCGAGTACAGCATGCGAAATTTGACCGCGAGCTTGGTGGC
CGATTACCGCGATCAACGTCTCAAGGTTGCTACCAACTCGTGCGTCTGCCGCGAACTCGCAACGATCAGCGCGGTGATCA
CGCATGCGCAGCGTGAATGGGGGCTTTCAATAACCAATCCTGCGAAGCTCGTGAAAAAGCCGCGATTGCCGCCCGGTCGA
AATCGCATATTGAAGCCAGCCGAGCTTGATCGCCTCTTGCATGAACTGCATGCGGAGCGCCACGAATTGCGGAGCAGGTG
GTTGCTACCGCTCGCCAAGCTTGCGCTGGAGACAGCGATGCGGCAGGGCGAATTGCTGTCACTGGAATGGAGGCACGTCG
ATTTCGATCAGCGCACGGCCTATCTGCCGATGACGAAAAACGGCAAGGATCGGCATGTTCCGTTGAGCAGTGCCGCGATC
GCGATTCTAGAGAGCTTGGAGCGCATCGACGAGCGCGTCATTCCGATCACTCAGAATGTCGTCTTGTGCGCGTGGCCGCG
AGCATGCAAGCGCGCTGCAATTGAAAACTTCCACTTTCACGATCTACGGCACATGGCAACGACGAATCTTGCGAAAAAGC
TGCCGAACGTGATCGAGCTTGCATCCGTGACCGGGCATTCCAACGTTCAGATGCTGAGTCGGTACTATCACACGTCAGCG
GGCGAACTGGCGAGAAAGCTCGGATAA

Upstream 100 bases:

>100_bases
GGGGTCGGATTCTAATTTAACCGTGGCCCAAGGCTTTCCAGCTTTTCCAATTGTCCGAAATCATGTTTTTGCAACTCAAC
CGCAACTCAGAGGCAAAAAC

Downstream 100 bases:

>100_bases
GCCTCGATAACTTGTGTATACCGTACACACGGGAAATCTCGGAAAACTTAGTTCCTTGATGACGAAGCCCTGTTAGATTG
CGTACGAACAGGGCTTGTAT

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 327

Protein sequence:

>328_residues
MATFSQRNGRWQVKINRKGFPTQYRSFATKAEGQVWARSVETAMDDGTWVDPAGTTDVTFGKLLERYRESITPTKRSRRS
EEYRIGKMLRHKIAEYSMRNLTASLVADYRDQRLKVATNSCVCRELATISAVITHAQREWGLSITNPAKLVKKPRLPPGR
NRILKPAELDRLLHELHAERHELRSRWLLPLAKLALETAMRQGELLSLEWRHVDFDQRTAYLPMTKNGKDRHVPLSSAAI
AILESLERIDERVIPITQNVVLCAWPRACKRAAIENFHFHDLRHMATTNLAKKLPNVIELASVTGHSNVQMLSRYYHTSA
GELARKLG

Sequences:

>Translated_328_residues
MATFSQRNGRWQVKINRKGFPTQYRSFATKAEGQVWARSVETAMDDGTWVDPAGTTDVTFGKLLERYRESITPTKRSRRS
EEYRIGKMLRHKIAEYSMRNLTASLVADYRDQRLKVATNSCVCRELATISAVITHAQREWGLSITNPAKLVKKPRLPPGR
NRILKPAELDRLLHELHAERHELRSRWLLPLAKLALETAMRQGELLSLEWRHVDFDQRTAYLPMTKNGKDRHVPLSSAAI
AILESLERIDERVIPITQNVVLCAWPRACKRAAIENFHFHDLRHMATTNLAKKLPNVIELASVTGHSNVQMLSRYYHTSA
GELARKLG
>Mature_327_residues
ATFSQRNGRWQVKINRKGFPTQYRSFATKAEGQVWARSVETAMDDGTWVDPAGTTDVTFGKLLERYRESITPTKRSRRSE
EYRIGKMLRHKIAEYSMRNLTASLVADYRDQRLKVATNSCVCRELATISAVITHAQREWGLSITNPAKLVKKPRLPPGRN
RILKPAELDRLLHELHAERHELRSRWLLPLAKLALETAMRQGELLSLEWRHVDFDQRTAYLPMTKNGKDRHVPLSSAAIA
ILESLERIDERVIPITQNVVLCAWPRACKRAAIENFHFHDLRHMATTNLAKKLPNVIELASVTGHSNVQMLSRYYHTSAG
ELARKLG

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=236, Percent_Identity=26.6949152542373, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37595; Mature: 37464

Theoretical pI: Translated: 10.68; Mature: 10.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATFSQRNGRWQVKINRKGFPTQYRSFATKAEGQVWARSVETAMDDGTWVDPAGTTDVTF
CCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCEECCCCCCCHHH
GKLLERYRESITPTKRSRRSEEYRIGKMLRHKIAEYSMRNLTASLVADYRDQRLKVATNS
HHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHH
CVCRELATISAVITHAQREWGLSITNPAKLVKKPRLPPGRNRILKPAELDRLLHELHAER
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
HELRSRWLLPLAKLALETAMRQGELLSLEWRHVDFDQRTAYLPMTKNGKDRHVPLSSAAI
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCEEECCCCCCCCCCCCCHHHHHH
AILESLERIDERVIPITQNVVLCAWPRACKRAAIENFHFHDLRHMATTNLAKKLPNVIEL
HHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHH
ASVTGHSNVQMLSRYYHTSAGELARKLG
HHHCCCCHHHHHHHHHCCCHHHHHHHCC
>Mature Secondary Structure 
ATFSQRNGRWQVKINRKGFPTQYRSFATKAEGQVWARSVETAMDDGTWVDPAGTTDVTF
CCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCEECCCCCCCHHH
GKLLERYRESITPTKRSRRSEEYRIGKMLRHKIAEYSMRNLTASLVADYRDQRLKVATNS
HHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHH
CVCRELATISAVITHAQREWGLSITNPAKLVKKPRLPPGRNRILKPAELDRLLHELHAER
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
HELRSRWLLPLAKLALETAMRQGELLSLEWRHVDFDQRTAYLPMTKNGKDRHVPLSSAAI
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCEEECCCCCCCCCCCCCHHHHHH
AILESLERIDERVIPITQNVVLCAWPRACKRAAIENFHFHDLRHMATTNLAKKLPNVIEL
HHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHH
ASVTGHSNVQMLSRYYHTSAGELARKLG
HHHCCCCHHHHHHHHHCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]