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The map label for this gene is yfdE [H]

Identifier: 161523607

GI number: 161523607

Start: 469165

End: 470370

Strand: Direct

Name: yfdE [H]

Synonym: Bmul_0427

Alternate gene names: 161523607

Gene position: 469165-470370 (Clockwise)

Preceding gene: 161523606

Following gene: 161523608

Centisome position: 13.61

GC content: 71.06

Gene sequence:

>1206_bases
ATGACGAACGAAGCGCGTGCGCTGCCGCTTGCCGGCGTCAAGGTGCTCGACGTGTCGCGCGTGCTCGCGGGCCCGTGGTG
CGCGATGGTGCTCGCCGATTTCGGCGCGGAAGTCGTGAAGGTCGAGCATCCCGCGCGCGGCGACGATACGCGCGACTGGG
GCATCCGGATCGGCGACACCGAAACCACGTACTTCAACAGCGTGAACCGCAGCAAGCGCTCGCTCTGCATCGACCTGCAG
ACGGAAGCGGGGCAGCGGATCGCGCAGGACCTCGCCGCGCAGGCCGACGTGCTGATTCACAACTTCAAGCTCGGCGGCGC
GGAAAAGCTCGGGCTCGGCTACGAGACGCTTGCCGAACGCAATCCGCGCCTCGTGCATTGCGCGATTTCGGGCTACGACC
GTTCGGGCCCGGAAGCCGCTCGCCCCGGCTACGACCTCGTCGTGCAGGGCGAGGCAGGGCTGATGGCGCTGAACGGCGAA
GCGGGCCAGCCGCCGCTGAAGTTCGGCGTCGCGGCGGTCGACCTGTTCACCGGCATGTATTCCGCGCAGGCGATTCTCGC
CGCGCTGTACGAGCGCCATGCGACCGGGCGCGGGCGGCGTATCGAGATGGCGCTGTTCGACTGCGGGCTGATGATCACGG
CGTACTACGGGCTCGACGCGCTGCTGATGGAGAAGGACCCGCCGCGCTACGGCAACGCGCATCCGTCGATCGTGCCGTAC
GGCGTGTTCGATGCGGCCGACGGCCCGCTCGTGATCACGGTCGGCAATAACACGCAGTTCGCGCGCTTTTGCGACGTGCT
CGAACGGCCCGATCTCGCTGTCGATCCGCGCTATCGCACCAATCTCGGCCGCTCGGAGAATCGCGCGGACCTGCTGCCCG
AACTGCGCCGCGAGCTCGCGCGCCGGCCGCGCGCGGCGCTGCTCGCCGCGCTCGCCGACGCCGGGATCCCGTGCGGCGAG
GTGCTGGGGCTGCATGAGGCGCTGACGTCCGAGCGCGCGACGCGCGCGGGGCTCGTCACGCGGCAGCCGCATCCGGTCGC
GGGCGGCGTGCACGTGCTCGCGCCGCCGTACCGCTTCGACGGCGCGCGATTGCCGGTGCGCGGTGCGCCGCCGGTGCTCG
GCGCCGATACCGATGCGGTGCTCGGCAGCTGGCTCGGGCTGTCCGCCGACGACGTCGCGCGGCTGCGCGCGGACCGCGTC
GTGTAA

Upstream 100 bases:

>100_bases
GATGATCGATCACCAGCTCGGCGACGAGGACCATCATCTCGCGCGCTATATCGCGCTGTCGAAACGATAACGCGCGCGAT
CGCAAATGGAGGAGACGAAC

Downstream 100 bases:

>100_bases
CCGATCATGCCGCCGCGGCGCGGGCGGCTCGGTTCACGCGCCGGTCATCGACAAGACAGCGTCGCGAGACGACGCACAGG
AGACACCATGGAGCTTTCCG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MTNEARALPLAGVKVLDVSRVLAGPWCAMVLADFGAEVVKVEHPARGDDTRDWGIRIGDTETTYFNSVNRSKRSLCIDLQ
TEAGQRIAQDLAAQADVLIHNFKLGGAEKLGLGYETLAERNPRLVHCAISGYDRSGPEAARPGYDLVVQGEAGLMALNGE
AGQPPLKFGVAAVDLFTGMYSAQAILAALYERHATGRGRRIEMALFDCGLMITAYYGLDALLMEKDPPRYGNAHPSIVPY
GVFDAADGPLVITVGNNTQFARFCDVLERPDLAVDPRYRTNLGRSENRADLLPELRRELARRPRAALLAALADAGIPCGE
VLGLHEALTSERATRAGLVTRQPHPVAGGVHVLAPPYRFDGARLPVRGAPPVLGADTDAVLGSWLGLSADDVARLRADRV
V

Sequences:

>Translated_401_residues
MTNEARALPLAGVKVLDVSRVLAGPWCAMVLADFGAEVVKVEHPARGDDTRDWGIRIGDTETTYFNSVNRSKRSLCIDLQ
TEAGQRIAQDLAAQADVLIHNFKLGGAEKLGLGYETLAERNPRLVHCAISGYDRSGPEAARPGYDLVVQGEAGLMALNGE
AGQPPLKFGVAAVDLFTGMYSAQAILAALYERHATGRGRRIEMALFDCGLMITAYYGLDALLMEKDPPRYGNAHPSIVPY
GVFDAADGPLVITVGNNTQFARFCDVLERPDLAVDPRYRTNLGRSENRADLLPELRRELARRPRAALLAALADAGIPCGE
VLGLHEALTSERATRAGLVTRQPHPVAGGVHVLAPPYRFDGARLPVRGAPPVLGADTDAVLGSWLGLSADDVARLRADRV
V
>Mature_400_residues
TNEARALPLAGVKVLDVSRVLAGPWCAMVLADFGAEVVKVEHPARGDDTRDWGIRIGDTETTYFNSVNRSKRSLCIDLQT
EAGQRIAQDLAAQADVLIHNFKLGGAEKLGLGYETLAERNPRLVHCAISGYDRSGPEAARPGYDLVVQGEAGLMALNGEA
GQPPLKFGVAAVDLFTGMYSAQAILAALYERHATGRGRRIEMALFDCGLMITAYYGLDALLMEKDPPRYGNAHPSIVPYG
VFDAADGPLVITVGNNTQFARFCDVLERPDLAVDPRYRTNLGRSENRADLLPELRRELARRPRAALLAALADAGIPCGEV
LGLHEALTSERATRAGLVTRQPHPVAGGVHVLAPPYRFDGARLPVRGAPPVLGADTDAVLGSWLGLSADDVARLRADRVV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=373, Percent_Identity=38.0697050938338, Blast_Score=286, Evalue=2e-77,
Organism=Homo sapiens, GI300863124, Length=399, Percent_Identity=36.0902255639098, Blast_Score=275, Evalue=4e-74,
Organism=Homo sapiens, GI300863126, Length=373, Percent_Identity=34.8525469168901, Blast_Score=234, Evalue=1e-61,
Organism=Homo sapiens, GI13376042, Length=399, Percent_Identity=32.5814536340852, Blast_Score=231, Evalue=1e-60,
Organism=Homo sapiens, GI42794625, Length=406, Percent_Identity=25.3694581280788, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI266456254, Length=406, Percent_Identity=25.3694581280788, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI266458393, Length=260, Percent_Identity=31.1538461538462, Blast_Score=115, Evalue=9e-26,
Organism=Homo sapiens, GI266458397, Length=260, Percent_Identity=31.1538461538462, Blast_Score=115, Evalue=9e-26,
Organism=Homo sapiens, GI42822893, Length=140, Percent_Identity=38.5714285714286, Blast_Score=92, Evalue=8e-19,
Organism=Homo sapiens, GI266458395, Length=140, Percent_Identity=38.5714285714286, Blast_Score=92, Evalue=9e-19,
Organism=Escherichia coli, GI87082093, Length=365, Percent_Identity=34.2465753424658, Blast_Score=241, Evalue=8e-65,
Organism=Escherichia coli, GI1788717, Length=417, Percent_Identity=29.9760191846523, Blast_Score=184, Evalue=1e-47,
Organism=Escherichia coli, GI1786222, Length=401, Percent_Identity=26.4339152119701, Blast_Score=100, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI32564160, Length=230, Percent_Identity=27.8260869565217, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI115535051, Length=228, Percent_Identity=26.3157894736842, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24648431, Length=395, Percent_Identity=41.5189873417722, Blast_Score=305, Evalue=3e-83,
Organism=Drosophila melanogaster, GI24585488, Length=210, Percent_Identity=29.0476190476191, Blast_Score=100, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43076; Mature: 42944

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNEARALPLAGVKVLDVSRVLAGPWCAMVLADFGAEVVKVEHPARGDDTRDWGIRIGDT
CCCCCCCCCCCCEEEEEHHHHHHCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEECCC
ETTYFNSVNRSKRSLCIDLQTEAGQRIAQDLAAQADVLIHNFKLGGAEKLGLGYETLAER
CCHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHEEEEEEECCCCHHCCCCHHHHHCC
NPRLVHCAISGYDRSGPEAARPGYDLVVQGEAGLMALNGEAGQPPLKFGVAAVDLFTGMY
CCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
SAQAILAALYERHATGRGRRIEMALFDCGLMITAYYGLDALLMEKDPPRYGNAHPSIVPY
HHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEE
GVFDAADGPLVITVGNNTQFARFCDVLERPDLAVDPRYRTNLGRSENRADLLPELRRELA
EEEECCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHH
RRPRAALLAALADAGIPCGEVLGLHEALTSERATRAGLVTRQPHPVAGGVHVLAPPYRFD
HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCC
GARLPVRGAPPVLGADTDAVLGSWLGLSADDVARLRADRVV
CCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
TNEARALPLAGVKVLDVSRVLAGPWCAMVLADFGAEVVKVEHPARGDDTRDWGIRIGDT
CCCCCCCCCCCEEEEEHHHHHHCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEECCC
ETTYFNSVNRSKRSLCIDLQTEAGQRIAQDLAAQADVLIHNFKLGGAEKLGLGYETLAER
CCHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHEEEEEEECCCCHHCCCCHHHHHCC
NPRLVHCAISGYDRSGPEAARPGYDLVVQGEAGLMALNGEAGQPPLKFGVAAVDLFTGMY
CCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
SAQAILAALYERHATGRGRRIEMALFDCGLMITAYYGLDALLMEKDPPRYGNAHPSIVPY
HHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEE
GVFDAADGPLVITVGNNTQFARFCDVLERPDLAVDPRYRTNLGRSENRADLLPELRRELA
EEEECCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHH
RRPRAALLAALADAGIPCGEVLGLHEALTSERATRAGLVTRQPHPVAGGVHVLAPPYRFD
HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCC
GARLPVRGAPPVLGADTDAVLGSWLGLSADDVARLRADRVV
CCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]