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The map label for this gene is rlpA [C]

Identifier: 161523375

GI number: 161523375

Start: 219261

End: 219869

Strand: Direct

Name: rlpA [C]

Synonym: Bmul_0195

Alternate gene names: 161523375

Gene position: 219261-219869 (Clockwise)

Preceding gene: 161523371

Following gene: 161523377

Centisome position: 6.36

GC content: 65.02

Gene sequence:

>609_bases
ATGAATTTACGACTTCCGAATCGATTCGGGACCATTGCTTTATTTTTTGCGCTCGCGGGCTGTGCGGTGCCACCCAGCCA
GACCACCGGGAGCGCGTCGCAGAAGAACGCGGTCGACAAGACGGCCGCGGCCGCAAAAGCGGACGATCAGCAACCGCTCA
ATTTCGATTCCGCGCTGGCATCGATGCCGGCCACCGGCAGCGACGACGCGAAGAAATCGTCGCTGGCCGACGCCGAGCCG
ATCGACGGCAAGGACGTCTCCGATTTCCGCCAGACCGGGCGCGCATCGTGGTACGGGAAGGGCTTCCACGGCCGCCGCAC
GGCGAACGGCGAGCGCTTCAACATGAACGCGTTCACCGCCGCACACCGTACGCTGCCGCTGTCGTCGTACATCAAGGTGA
CGAACGCGTCGAACGGCAAGTGGGTCGTCGTGAAGGTCAACGATCGCGGGCCGTTCAAGCGCGGCCGCGTGCTCGACCTC
TCGTATGCGGCCGCGAAGGTGATCGGCCTCGTGCATGCCGGCACCGGCCGCGTGAAGATCGAAGGGCTCTCGCCGCAGGA
AGCGCGCGAGGCGCGCGACGAGATGCTCGCGTCGATCTCGTCGAAGTAA

Upstream 100 bases:

>100_bases
CGCTCGAGCGGGACGTGCACGCATTTGCCGTCCGGGCCGCGTATCCGCGTCGCGAAACAGCGTCAGGAACAGGCGGCCCG
AACCAGAAGGCGACACGTCG

Downstream 100 bases:

>100_bases
CATCGCGGAGCGTTTCCGCATGCAGAAGGGCTGCCGCCGGCAGCCCTTCGTCATTGATGCGCGGTGCGTGTGCGCCCGCC
GTCAACCTTCCTTCAGCGCG

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MNLRLPNRFGTIALFFALAGCAVPPSQTTGSASQKNAVDKTAAAAKADDQQPLNFDSALASMPATGSDDAKKSSLADAEP
IDGKDVSDFRQTGRASWYGKGFHGRRTANGERFNMNAFTAAHRTLPLSSYIKVTNASNGKWVVVKVNDRGPFKRGRVLDL
SYAAAKVIGLVHAGTGRVKIEGLSPQEAREARDEMLASISSK

Sequences:

>Translated_202_residues
MNLRLPNRFGTIALFFALAGCAVPPSQTTGSASQKNAVDKTAAAAKADDQQPLNFDSALASMPATGSDDAKKSSLADAEP
IDGKDVSDFRQTGRASWYGKGFHGRRTANGERFNMNAFTAAHRTLPLSSYIKVTNASNGKWVVVKVNDRGPFKRGRVLDL
SYAAAKVIGLVHAGTGRVKIEGLSPQEAREARDEMLASISSK
>Mature_202_residues
MNLRLPNRFGTIALFFALAGCAVPPSQTTGSASQKNAVDKTAAAAKADDQQPLNFDSALASMPATGSDDAKKSSLADAEP
IDGKDVSDFRQTGRASWYGKGFHGRRTANGERFNMNAFTAAHRTLPLSSYIKVTNASNGKWVVVKVNDRGPFKRGRVLDL
SYAAAKVIGLVHAGTGRVKIEGLSPQEAREARDEMLASISSK

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=82, Percent_Identity=47.5609756097561, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 21514; Mature: 21514

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLRLPNRFGTIALFFALAGCAVPPSQTTGSASQKNAVDKTAAAAKADDQQPLNFDSALA
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHH
SMPATGSDDAKKSSLADAEPIDGKDVSDFRQTGRASWYGKGFHGRRTANGERFNMNAFTA
HCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEECHHHHH
AHRTLPLSSYIKVTNASNGKWVVVKVNDRGPFKRGRVLDLSYAAAKVIGLVHAGTGRVKI
HHHCCCHHHEEEEEECCCCCEEEEEECCCCCCCCCCEEEHHHHHHHHHHHEECCCCEEEE
EGLSPQEAREARDEMLASISSK
ECCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNLRLPNRFGTIALFFALAGCAVPPSQTTGSASQKNAVDKTAAAAKADDQQPLNFDSALA
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHH
SMPATGSDDAKKSSLADAEPIDGKDVSDFRQTGRASWYGKGFHGRRTANGERFNMNAFTA
HCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEECHHHHH
AHRTLPLSSYIKVTNASNGKWVVVKVNDRGPFKRGRVLDLSYAAAKVIGLVHAGTGRVKI
HHHCCCHHHEEEEEECCCCCEEEEEECCCCCCCCCCEEEHHHHHHHHHHHEECCCCEEEE
EGLSPQEAREARDEMLASISSK
ECCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]