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The map label for this gene is ybdL [H]

Identifier: 161523298

GI number: 161523298

Start: 129325

End: 130479

Strand: Direct

Name: ybdL [H]

Synonym: Bmul_0118

Alternate gene names: 161523298

Gene position: 129325-130479 (Clockwise)

Preceding gene: 161523297

Following gene: 161523299

Centisome position: 3.75

GC content: 67.88

Gene sequence:

>1155_bases
ATGCGAAGCGCCACTGCGCCCCGTTCGAAACTGCCCGACGTCGGCACGACGATCTTCACCGTGATCGGCCAGCTCGCCGC
GCAGCACGACGCGCTGAACCTGTCGCAGGGCGCGCCCAATTTCGCGCCGGATCCTGCGCTCGTCGAGGGCGTCGCGCGCG
CGATGCGCGACGGCCACAACCAGTACGCGCCGATGGCCGGCGTCGCGGCGCTGCGCGAGCGGCTCGCGGAGAAGACCGAG
ACGCTGTACGGCACCCGTTACGATCCGGCGACCGAGATCACCGTCATCGCGAGCGCGAGCGAAGGGCTCTATGCGGCGAT
CAGCGCGCTCGTGCATCCGGGCGACGAGGTCATCTATTTCGAGCCGTCGTTCGACAGCTACGCGCCGATCGTGCGGATGC
AGGGTGCGACGCCGGTCGCGATCAAGCTGTCGCCCGAGGATTTCCGCGTGAACTGGGACGAGGTCGCGGCCGCGATCACG
CCGCGTACGCGCATGATCATCGTCAACACGCCGCACAACCCGACCGCGACCGTGCTGTCGGGCGACGATCTCGCGCGGCT
TGCGCAGCTCACGCGCGGCACCGACATCGTGATCCTGTCCGACGAGGTGTACGAGCACGTCGTATTCGACGGCGCGCTGC
ATCAGAGCATGGCGCGGCACCGCGAGCTGGCCGAGCGCAGCGTGATCGTGTCGTCGTTCGGCAAGTCGTTCCATGTGACG
GGCTGGCGCGTCGGCTACTGTCTCGCGCCGGCCGCGCTGATGGACGAGATCCGCAAGGTGCATCAGTTCATGGTGTTCTC
GGCCGACACGCCGATGCAGATCGCGTTCGCCGACATCCTCGCGCGCCCGGACAGCTACCTCGGGCTGTCGGCGTTCTATC
AGGCCAAGCGCGACCTGCTCGCGCGCGAGCTCGCCGGTTCACGGTTCGAGCTGCTGCCGAGCGCGGGCTCGTTCTTCATG
CTCGCGCGGTTCCGGCATTTCTCGGACGAGCGCGACAGCGATTTCGTGCTGCGGCTGATCCGCGATGCGCGCGTCGCGAC
GATTCCGCTGTCGGCGTTCTATACCGACGGCACCGATGCGGGCCTGATCCGGCTCAGTTTCTCGAAGGACGACGCGACGC
TGATCGAAGGCGCGCGGCGCTTGCGTTCGCTGTAG

Upstream 100 bases:

>100_bases
TTCGGTTGTCCGCCGATATTGGCTCGGGCTAAATCATGCGGAACGCGCAGGCCGCGCAAGCGTGCGGCCGGCCCGACAGA
CACCGGAAGGAGGAGGAGAC

Downstream 100 bases:

>100_bases
GCGCGGCGCCCCCGCCGCTGCAATCGACAACAGGAGATCACGATGAAACCCACGCACTGCCTGAAACTGGCGATCGCGCT
CGCATGCGCGCTCGGTTCCG

Product: putative aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MRSATAPRSKLPDVGTTIFTVIGQLAAQHDALNLSQGAPNFAPDPALVEGVARAMRDGHNQYAPMAGVAALRERLAEKTE
TLYGTRYDPATEITVIASASEGLYAAISALVHPGDEVIYFEPSFDSYAPIVRMQGATPVAIKLSPEDFRVNWDEVAAAIT
PRTRMIIVNTPHNPTATVLSGDDLARLAQLTRGTDIVILSDEVYEHVVFDGALHQSMARHRELAERSVIVSSFGKSFHVT
GWRVGYCLAPAALMDEIRKVHQFMVFSADTPMQIAFADILARPDSYLGLSAFYQAKRDLLARELAGSRFELLPSAGSFFM
LARFRHFSDERDSDFVLRLIRDARVATIPLSAFYTDGTDAGLIRLSFSKDDATLIEGARRLRSL

Sequences:

>Translated_384_residues
MRSATAPRSKLPDVGTTIFTVIGQLAAQHDALNLSQGAPNFAPDPALVEGVARAMRDGHNQYAPMAGVAALRERLAEKTE
TLYGTRYDPATEITVIASASEGLYAAISALVHPGDEVIYFEPSFDSYAPIVRMQGATPVAIKLSPEDFRVNWDEVAAAIT
PRTRMIIVNTPHNPTATVLSGDDLARLAQLTRGTDIVILSDEVYEHVVFDGALHQSMARHRELAERSVIVSSFGKSFHVT
GWRVGYCLAPAALMDEIRKVHQFMVFSADTPMQIAFADILARPDSYLGLSAFYQAKRDLLARELAGSRFELLPSAGSFFM
LARFRHFSDERDSDFVLRLIRDARVATIPLSAFYTDGTDAGLIRLSFSKDDATLIEGARRLRSL
>Mature_384_residues
MRSATAPRSKLPDVGTTIFTVIGQLAAQHDALNLSQGAPNFAPDPALVEGVARAMRDGHNQYAPMAGVAALRERLAEKTE
TLYGTRYDPATEITVIASASEGLYAAISALVHPGDEVIYFEPSFDSYAPIVRMQGATPVAIKLSPEDFRVNWDEVAAAIT
PRTRMIIVNTPHNPTATVLSGDDLARLAQLTRGTDIVILSDEVYEHVVFDGALHQSMARHRELAERSVIVSSFGKSFHVT
GWRVGYCLAPAALMDEIRKVHQFMVFSADTPMQIAFADILARPDSYLGLSAFYQAKRDLLARELAGSRFELLPSAGSFFM
LARFRHFSDERDSDFVLRLIRDARVATIPLSAFYTDGTDAGLIRLSFSKDDATLIEGARRLRSL

Specific function: Shows aminotransferase activity with methionine and histidine as substrates, and to a lesser extent also with phenylalanine [H]

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI95147551, Length=395, Percent_Identity=33.6708860759494, Blast_Score=208, Evalue=9e-54,
Organism=Homo sapiens, GI169881279, Length=395, Percent_Identity=33.6708860759494, Blast_Score=208, Evalue=9e-54,
Organism=Homo sapiens, GI56713254, Length=390, Percent_Identity=32.0512820512821, Blast_Score=198, Evalue=6e-51,
Organism=Homo sapiens, GI56713256, Length=390, Percent_Identity=32.0512820512821, Blast_Score=198, Evalue=7e-51,
Organism=Homo sapiens, GI169881281, Length=395, Percent_Identity=29.873417721519, Blast_Score=162, Evalue=4e-40,
Organism=Homo sapiens, GI4507369, Length=375, Percent_Identity=25.3333333333333, Blast_Score=102, Evalue=8e-22,
Organism=Escherichia coli, GI1786816, Length=379, Percent_Identity=51.7150395778364, Blast_Score=389, Evalue=1e-109,
Organism=Escherichia coli, GI1788722, Length=362, Percent_Identity=24.585635359116, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1788627, Length=341, Percent_Identity=25.5131964809384, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1788332, Length=262, Percent_Identity=25.9541984732824, Blast_Score=72, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71994476, Length=423, Percent_Identity=32.1513002364066, Blast_Score=214, Evalue=6e-56,
Organism=Caenorhabditis elegans, GI71994472, Length=423, Percent_Identity=32.1513002364066, Blast_Score=214, Evalue=6e-56,
Organism=Caenorhabditis elegans, GI17567369, Length=413, Percent_Identity=30.9927360774818, Blast_Score=197, Evalue=8e-51,
Organism=Caenorhabditis elegans, GI17567663, Length=354, Percent_Identity=24.8587570621469, Blast_Score=97, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6322401, Length=390, Percent_Identity=28.974358974359, Blast_Score=171, Evalue=2e-43,
Organism=Drosophila melanogaster, GI28573069, Length=392, Percent_Identity=33.1632653061224, Blast_Score=200, Evalue=1e-51,
Organism=Drosophila melanogaster, GI24646114, Length=392, Percent_Identity=33.1632653061224, Blast_Score=200, Evalue=1e-51,
Organism=Drosophila melanogaster, GI28573067, Length=392, Percent_Identity=33.1632653061224, Blast_Score=200, Evalue=1e-51,
Organism=Drosophila melanogaster, GI28573065, Length=392, Percent_Identity=33.1632653061224, Blast_Score=200, Evalue=1e-51,
Organism=Drosophila melanogaster, GI18859735, Length=356, Percent_Identity=24.7191011235955, Blast_Score=86, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: 2.6.1.- [C]

Molecular weight: Translated: 42135; Mature: 42135

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSATAPRSKLPDVGTTIFTVIGQLAAQHDALNLSQGAPNFAPDPALVEGVARAMRDGHN
CCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
QYAPMAGVAALRERLAEKTETLYGTRYDPATEITVIASASEGLYAAISALVHPGDEVIYF
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEE
EPSFDSYAPIVRMQGATPVAIKLSPEDFRVNWDEVAAAITPRTRMIIVNTPHNPTATVLS
CCCCCCCCCEEEECCCCEEEEEECCCHHCCCHHHHHHHCCCCEEEEEEECCCCCCEEEEC
GDDLARLAQLTRGTDIVILSDEVYEHVVFDGALHQSMARHRELAERSVIVSSFGKSFHVT
CHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
GWRVGYCLAPAALMDEIRKVHQFMVFSADTPMQIAFADILARPDSYLGLSAFYQAKRDLL
CEEHHHHHCHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
ARELAGSRFELLPSAGSFFMLARFRHFSDERDSDFVLRLIRDARVATIPLSAFYTDGTDA
HHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEEEEECCCCCC
GLIRLSFSKDDATLIEGARRLRSL
EEEEEEECCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MRSATAPRSKLPDVGTTIFTVIGQLAAQHDALNLSQGAPNFAPDPALVEGVARAMRDGHN
CCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
QYAPMAGVAALRERLAEKTETLYGTRYDPATEITVIASASEGLYAAISALVHPGDEVIYF
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEE
EPSFDSYAPIVRMQGATPVAIKLSPEDFRVNWDEVAAAITPRTRMIIVNTPHNPTATVLS
CCCCCCCCCEEEECCCCEEEEEECCCHHCCCHHHHHHHCCCCEEEEEEECCCCCCEEEEC
GDDLARLAQLTRGTDIVILSDEVYEHVVFDGALHQSMARHRELAERSVIVSSFGKSFHVT
CHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
GWRVGYCLAPAALMDEIRKVHQFMVFSADTPMQIAFADILARPDSYLGLSAFYQAKRDLL
CEEHHHHHCHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
ARELAGSRFELLPSAGSFFMLARFRHFSDERDSDFVLRLIRDARVATIPLSAFYTDGTDA
HHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEEEEECCCCCC
GLIRLSFSKDDATLIEGARRLRSL
EEEEEEECCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Pyridoxal Phosphate. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]