Click here to switch to the map view.

The map label for this gene is aidB [H]

Identifier: 161523296

GI number: 161523296

Start: 126697

End: 128349

Strand: Reverse

Name: aidB [H]

Synonym: Bmul_0116

Alternate gene names: 161523296

Gene position: 128349-126697 (Counterclockwise)

Preceding gene: 161523301

Following gene: 161523291

Centisome position: 3.72

GC content: 70.9

Gene sequence:

>1653_bases
ATGAGCGAACCGACCCACGTCGTCACGAACCAGTTCGACGAACTGGTCGACTATAACCCGTTCGCGACCGACATCGCGCT
GCGCGACGCACTCGCGCGCGCCGGCGCGGACTGGGCCGTGCCGCAGCTCGACGCCTACGGCGCGCGGCTCGGCAGCGCCG
ATACCGCGCGGCTCGCCGACGAAGCGAACCGCCATACGCCGGAACTGAACGTGTTCGACCGGCGCGGCCGCCGCATCGAC
CGCGTCGAATTCCATCCGGCGTGGCACGCGCTGCTCGGCCTGTACCGGAACGAAGGCTTCGTGTCGCTCGCGTTTCGCGA
TACGCGGCGCGGCCGCTGGGCCGCGACCGCCGCCGGCTTCTATCTGCACGGTCAGATCGAGGCCGGCACGCTGTGCCCGG
CGACGATGACGCAGGCCGCGATTCCGGTGCTGCAGAAGGAGCCCGCGCTCTGGGAAGCGCTGCGCGACAAGCTGTACAGC
GACGACTACGATGCGCGCGACGTGCCGATCGCCGACAAGCGCTCGATCTGGTTCGGCATGGGGATGACCGAGAAACAGGG
CGGCTCGGACGTGCGCGCGAACACGACGCTCGCGACGCCGGTCGGCGCGGGCGGACGCGGCGGCGAGTACCGGCTGCGCG
GCCACAAGTGGTTCTTCTCGGCGCCGATGTGCGACGCGCACCTCGTCGTCGCGCGCACCGAAGCCGGCAGCCCGTCGTGC
TTCTATGTGCCGCGCTGGCGGCCGGACGGCACGAAGAACGCGGTCGAGATCCAGCGTCTGAAGAACAAGGTCGGCAACCG
CAGCAACTCGAGCAGCGAAATCGAGCTCGACGACGCGTGGGGCATCATGCTCGGCGACGAAGGGCGCGGGATCCCGACCA
TCATCGACATGGCGACCTACACGCGGCTCAACTGCGTGCTCGGCAGCGCGGCGATGCTGCGTCAGGGCGTCGTGCAGGCG
ATCGCGTACACGCGCCAGCGCCACGCGTTCGGCCGCGCACTCGCCGAGCAGCCGCTGATGCGCACGGTGCTCGCCGATCT
CGCGCTCGAAAGCGAAGCCGCGCTCGTGCTCGCGATGCGGCTCGCCGATGCGTTCGAGCACGACGACTCGCCGCGCGAGC
GCGCATGGAAGCGGATCGTCACGCCGGCCGCGAAGTTCTGGGTCTGCAAGCGTGCGGTCGAGCTGACCGGCGAGGTCATG
GAAGTGTTCGGCGGCAACGGCTACGTCGACGACGGCCCGATCGCGCGGCTGTTCCGCGAGGCGCCCGTCAATTCGATCTG
GGAAGGCTCGGGCAACGTGATGTGCCTCGACGTGCTGCGCGCGGTGTCGCGCGAGCCCGATTCGGCTGCCGCGCTGTTCG
CCGAACTGAGCGAACTCGGCGCCGGCGAACCGCGGATCCGCGCGGCGCTCGACGCGCTGCGTGCGATGCTGGCCGCGCCG
GCCGACACGCTGGAGGCGTCCGCGCGCCTGTTCGCCGAGCGGCTCGCGCTGACGGCCCAGGCCTGCCTGCTGCGACGCGA
TGCGCCGGCGGCCGTGTCCGATGCGTTCATCGCGACGCGGCTCGGCGAAGCGTCGTGGGGACGCGTGGCCGGCGCGTTCG
ACCCGCATGCGATCGACGTCGGCGCGTTGCTCGAGCGCGCGTATCCGCAGTGA

Upstream 100 bases:

>100_bases
CGCGGCGGCATATTTGCTACCCTCGAATTCGAGACGAACGCGCTTCGTCGCGCGGCCCCACGCGGGTCGAACGCGCGGCC
GCGCCGACAGGAGACATTCG

Downstream 100 bases:

>100_bases
CGGTGCGCGCGATTCGCGGATTCGCGCGCGTGTGACCGGTACCGGTCGATGCAGCGATGCGGCGCTCGACGAAGTCAAAT
CGCTGCCCGATCGCCCGGCC

Product: acyl-CoA dehydrogenase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 550; Mature: 549

Protein sequence:

>550_residues
MSEPTHVVTNQFDELVDYNPFATDIALRDALARAGADWAVPQLDAYGARLGSADTARLADEANRHTPELNVFDRRGRRID
RVEFHPAWHALLGLYRNEGFVSLAFRDTRRGRWAATAAGFYLHGQIEAGTLCPATMTQAAIPVLQKEPALWEALRDKLYS
DDYDARDVPIADKRSIWFGMGMTEKQGGSDVRANTTLATPVGAGGRGGEYRLRGHKWFFSAPMCDAHLVVARTEAGSPSC
FYVPRWRPDGTKNAVEIQRLKNKVGNRSNSSSEIELDDAWGIMLGDEGRGIPTIIDMATYTRLNCVLGSAAMLRQGVVQA
IAYTRQRHAFGRALAEQPLMRTVLADLALESEAALVLAMRLADAFEHDDSPRERAWKRIVTPAAKFWVCKRAVELTGEVM
EVFGGNGYVDDGPIARLFREAPVNSIWEGSGNVMCLDVLRAVSREPDSAAALFAELSELGAGEPRIRAALDALRAMLAAP
ADTLEASARLFAERLALTAQACLLRRDAPAAVSDAFIATRLGEASWGRVAGAFDPHAIDVGALLERAYPQ

Sequences:

>Translated_550_residues
MSEPTHVVTNQFDELVDYNPFATDIALRDALARAGADWAVPQLDAYGARLGSADTARLADEANRHTPELNVFDRRGRRID
RVEFHPAWHALLGLYRNEGFVSLAFRDTRRGRWAATAAGFYLHGQIEAGTLCPATMTQAAIPVLQKEPALWEALRDKLYS
DDYDARDVPIADKRSIWFGMGMTEKQGGSDVRANTTLATPVGAGGRGGEYRLRGHKWFFSAPMCDAHLVVARTEAGSPSC
FYVPRWRPDGTKNAVEIQRLKNKVGNRSNSSSEIELDDAWGIMLGDEGRGIPTIIDMATYTRLNCVLGSAAMLRQGVVQA
IAYTRQRHAFGRALAEQPLMRTVLADLALESEAALVLAMRLADAFEHDDSPRERAWKRIVTPAAKFWVCKRAVELTGEVM
EVFGGNGYVDDGPIARLFREAPVNSIWEGSGNVMCLDVLRAVSREPDSAAALFAELSELGAGEPRIRAALDALRAMLAAP
ADTLEASARLFAERLALTAQACLLRRDAPAAVSDAFIATRLGEASWGRVAGAFDPHAIDVGALLERAYPQ
>Mature_549_residues
SEPTHVVTNQFDELVDYNPFATDIALRDALARAGADWAVPQLDAYGARLGSADTARLADEANRHTPELNVFDRRGRRIDR
VEFHPAWHALLGLYRNEGFVSLAFRDTRRGRWAATAAGFYLHGQIEAGTLCPATMTQAAIPVLQKEPALWEALRDKLYSD
DYDARDVPIADKRSIWFGMGMTEKQGGSDVRANTTLATPVGAGGRGGEYRLRGHKWFFSAPMCDAHLVVARTEAGSPSCF
YVPRWRPDGTKNAVEIQRLKNKVGNRSNSSSEIELDDAWGIMLGDEGRGIPTIIDMATYTRLNCVLGSAAMLRQGVVQAI
AYTRQRHAFGRALAEQPLMRTVLADLALESEAALVLAMRLADAFEHDDSPRERAWKRIVTPAAKFWVCKRAVELTGEVME
VFGGNGYVDDGPIARLFREAPVNSIWEGSGNVMCLDVLRAVSREPDSAAALFAELSELGAGEPRIRAALDALRAMLAAPA
DTLEASARLFAERLALTAQACLLRRDAPAAVSDAFIATRLGEASWGRVAGAFDPHAIDVGALLERAYPQ

Specific function: May help to prevent alkylation damage by protecting DNA and destroying alkylating agents [H]

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI226958412, Length=269, Percent_Identity=25.2788104089219, Blast_Score=80, Evalue=5e-15,
Organism=Homo sapiens, GI226958414, Length=269, Percent_Identity=25.2788104089219, Blast_Score=80, Evalue=6e-15,
Organism=Homo sapiens, GI4557231, Length=266, Percent_Identity=24.812030075188, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI187960098, Length=266, Percent_Identity=24.812030075188, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI7656849, Length=274, Percent_Identity=26.2773722627737, Blast_Score=71, Evalue=3e-12,
Organism=Homo sapiens, GI4557233, Length=267, Percent_Identity=25.8426966292135, Blast_Score=70, Evalue=8e-12,
Organism=Homo sapiens, GI4501859, Length=273, Percent_Identity=26.007326007326, Blast_Score=69, Evalue=8e-12,
Organism=Escherichia coli, GI87082384, Length=495, Percent_Identity=47.0707070707071, Blast_Score=424, Evalue=1e-120,
Organism=Escherichia coli, GI1786223, Length=274, Percent_Identity=25.5474452554745, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081958, Length=272, Percent_Identity=23.8970588235294, Blast_Score=71, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI86563383, Length=518, Percent_Identity=28.7644787644788, Blast_Score=181, Evalue=6e-46,
Organism=Caenorhabditis elegans, GI86563381, Length=518, Percent_Identity=28.7644787644788, Blast_Score=181, Evalue=8e-46,
Organism=Caenorhabditis elegans, GI17538396, Length=274, Percent_Identity=25.5474452554745, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17508101, Length=281, Percent_Identity=25.2669039145907, Blast_Score=74, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17569725, Length=265, Percent_Identity=23.3962264150943, Blast_Score=69, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17533517, Length=271, Percent_Identity=24.7232472324723, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17506239, Length=275, Percent_Identity=23.6363636363636, Blast_Score=65, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17534899, Length=267, Percent_Identity=23.2209737827715, Blast_Score=65, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24660351, Length=272, Percent_Identity=26.8382352941176, Blast_Score=79, Evalue=7e-15,
Organism=Drosophila melanogaster, GI21356377, Length=273, Percent_Identity=25.2747252747253, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21355753, Length=263, Percent_Identity=23.574144486692, Blast_Score=74, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24646207, Length=286, Percent_Identity=24.4755244755245, Blast_Score=72, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M [H]

EC number: NA

Molecular weight: Translated: 60138; Mature: 60007

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: PS00072 ACYL_COA_DH_1 ; PS00073 ACYL_COA_DH_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEPTHVVTNQFDELVDYNPFATDIALRDALARAGADWAVPQLDAYGARLGSADTARLAD
CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHH
EANRHTPELNVFDRRGRRIDRVEFHPAWHALLGLYRNEGFVSLAFRDTRRGRWAATAAGF
HHHCCCCCCCHHHHCCCEECEEEECHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEECCE
YLHGQIEAGTLCPATMTQAAIPVLQKEPALWEALRDKLYSDDYDARDVPIADKRSIWFGM
EEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEC
GMTEKQGGSDVRANTTLATPVGAGGRGGEYRLRGHKWFFSAPMCDAHLVVARTEAGSPSC
CCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEECCEEEEECCCCCCEEEEEEECCCCCCE
FYVPRWRPDGTKNAVEIQRLKNKVGNRSNSSSEIELDDAWGIMLGDEGRGIPTIIDMATY
EEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEECCCCCCCCHHHHHHHH
TRLNCVLGSAAMLRQGVVQAIAYTRQRHAFGRALAEQPLMRTVLADLALESEAALVLAMR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LADAFEHDDSPRERAWKRIVTPAAKFWVCKRAVELTGEVMEVFGGNGYVDDGPIARLFRE
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
APVNSIWEGSGNVMCLDVLRAVSREPDSAAALFAELSELGAGEPRIRAALDALRAMLAAP
CCCCHHHCCCCCEEHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
ADTLEASARLFAERLALTAQACLLRRDAPAAVSDAFIATRLGEASWGRVAGAFDPHAIDV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH
GALLERAYPQ
HHHHHHCCCC
>Mature Secondary Structure 
SEPTHVVTNQFDELVDYNPFATDIALRDALARAGADWAVPQLDAYGARLGSADTARLAD
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHH
EANRHTPELNVFDRRGRRIDRVEFHPAWHALLGLYRNEGFVSLAFRDTRRGRWAATAAGF
HHHCCCCCCCHHHHCCCEECEEEECHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEECCE
YLHGQIEAGTLCPATMTQAAIPVLQKEPALWEALRDKLYSDDYDARDVPIADKRSIWFGM
EEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEC
GMTEKQGGSDVRANTTLATPVGAGGRGGEYRLRGHKWFFSAPMCDAHLVVARTEAGSPSC
CCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEECCEEEEECCCCCCEEEEEEECCCCCCE
FYVPRWRPDGTKNAVEIQRLKNKVGNRSNSSSEIELDDAWGIMLGDEGRGIPTIIDMATY
EEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEECCCCCCCCHHHHHHHH
TRLNCVLGSAAMLRQGVVQAIAYTRQRHAFGRALAEQPLMRTVLADLALESEAALVLAMR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LADAFEHDDSPRERAWKRIVTPAAKFWVCKRAVELTGEVMEVFGGNGYVDDGPIARLFRE
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
APVNSIWEGSGNVMCLDVLRAVSREPDSAAALFAELSELGAGEPRIRAALDALRAMLAAP
CCCCHHHCCCCCEEHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
ADTLEASARLFAERLALTAQACLLRRDAPAAVSDAFIATRLGEASWGRVAGAFDPHAIDV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH
GALLERAYPQ
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961409; 7610040; 9278503 [H]