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The map label for this gene is ybdK [C]

Identifier: 161523249

GI number: 161523249

Start: 74698

End: 75813

Strand: Direct

Name: ybdK [C]

Synonym: Bmul_0069

Alternate gene names: 161523249

Gene position: 74698-75813 (Clockwise)

Preceding gene: 161523248

Following gene: 161523250

Centisome position: 2.17

GC content: 63.08

Gene sequence:

>1116_bases
ATGGCACTCGAAACCTTCGTCAATTCCGAGCCGTTCACGTTCGGCGTCGAACTCGAAATCCAGGTCGTCAACACGCACAA
CTACGACCTCACCAAGGCCGCATCGGACCTGATGCGGCTGATCCAGGGCGAGACCTTTCCGGGCAACATCACGCCGGAAA
TCACCGAGAGCATGATCGAGCTGTCGACCGGCATCTGCCATACGCACGAGCAGGCGCTCGGCGAGCTGCACGCGATCCGC
GACGTGCTCGTGAAGGCGGCCGACCAGCTCAACGTCGGGCTGGCCGGCGGCGGTACGCACGCGTTCCAGCAATGGAGCGA
CCGGCAGATCTACGACGCGCCGCGCTTCCAGTATCTGTCCGAGCTGTACGGCTATCTCGCGAAGCAGTTCACGGTGTTCG
GCCAGCACGTGCACATCGGCTGTCCCGATCCCGACAGCGCGCTGTTCCTGCTGCATTCGATGTCGCGCTTCATTCCGCAC
TTCATCGCGCTGTCGGCGTCCTCGCCGTTCGTGCAGAACGTCGACACCGGCTTCCATTCCGCGCGGCTCAATTCGGTGTT
CGCATTTCCGCTGTCGGGTCGCGCGCCGTTCGCGCTCACGTGGCACGACTTCGAGGAATACTTCACGAAGATGGTGAACA
CGGGCGTCGTGAACTCGATGAAGGATTTCTACTGGGACATTCGCCCCAAGCCCGGCTACGGAACGATCGAAGTGCGCGTG
ATGGATACGCCGCTGTCGGTCGATCGTGCGGCCGCGATCGCGTGCTACATCCAGACGCTCGCGCGCTATCTGCTGATCGA
TCGTCCGCTGACGCTCACCGAGGACGACTATCTCGTCTACACGTTCAACCGTTTCGAGGCGTGCCGCTTCGGGCTCGAAG
GCACGTGCGTGAATCCTCAGACGGGTGAGCGCCGCACGATCGCCGAGGACATCCTCGATACGCTCGACCGGATCGCCCCG
CATGCGGCCGAGCTCGGCTCGCGCGCGGCGCTCGACGAGATCGGTGCGCTCGCGAAAGCGCGCGTGAACGACGCGTCGTG
GCTGCGAACCGTCTTCAAGCAGGAAAAATCGCTGAACGAAACCGTTCGCCAGCAGTGCCTGCGTTGGCGCGAATGA

Upstream 100 bases:

>100_bases
CGATCGTGATCCTGCAGCTCGTCAGCCCGTTCGTCGTCTACCGATGCCTGTCGGCGGTCGGCGAGCGCAGCGACGGCAAC
TGATTCCGGAACCCCCTGCC

Downstream 100 bases:

>100_bases
AAAAATGTTTTGCAGATTGCGGACTCGACCGCGTCGCGATTCGCTGAGTGCGAACCGGCACGCGTCGAGTCGGCAACCGT
TGCCGGTTCTGCCGCCATGC

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 370

Protein sequence:

>371_residues
MALETFVNSEPFTFGVELEIQVVNTHNYDLTKAASDLMRLIQGETFPGNITPEITESMIELSTGICHTHEQALGELHAIR
DVLVKAADQLNVGLAGGGTHAFQQWSDRQIYDAPRFQYLSELYGYLAKQFTVFGQHVHIGCPDPDSALFLLHSMSRFIPH
FIALSASSPFVQNVDTGFHSARLNSVFAFPLSGRAPFALTWHDFEEYFTKMVNTGVVNSMKDFYWDIRPKPGYGTIEVRV
MDTPLSVDRAAAIACYIQTLARYLLIDRPLTLTEDDYLVYTFNRFEACRFGLEGTCVNPQTGERRTIAEDILDTLDRIAP
HAAELGSRAALDEIGALAKARVNDASWLRTVFKQEKSLNETVRQQCLRWRE

Sequences:

>Translated_371_residues
MALETFVNSEPFTFGVELEIQVVNTHNYDLTKAASDLMRLIQGETFPGNITPEITESMIELSTGICHTHEQALGELHAIR
DVLVKAADQLNVGLAGGGTHAFQQWSDRQIYDAPRFQYLSELYGYLAKQFTVFGQHVHIGCPDPDSALFLLHSMSRFIPH
FIALSASSPFVQNVDTGFHSARLNSVFAFPLSGRAPFALTWHDFEEYFTKMVNTGVVNSMKDFYWDIRPKPGYGTIEVRV
MDTPLSVDRAAAIACYIQTLARYLLIDRPLTLTEDDYLVYTFNRFEACRFGLEGTCVNPQTGERRTIAEDILDTLDRIAP
HAAELGSRAALDEIGALAKARVNDASWLRTVFKQEKSLNETVRQQCLRWRE
>Mature_370_residues
ALETFVNSEPFTFGVELEIQVVNTHNYDLTKAASDLMRLIQGETFPGNITPEITESMIELSTGICHTHEQALGELHAIRD
VLVKAADQLNVGLAGGGTHAFQQWSDRQIYDAPRFQYLSELYGYLAKQFTVFGQHVHIGCPDPDSALFLLHSMSRFIPHF
IALSASSPFVQNVDTGFHSARLNSVFAFPLSGRAPFALTWHDFEEYFTKMVNTGVVNSMKDFYWDIRPKPGYGTIEVRVM
DTPLSVDRAAAIACYIQTLARYLLIDRPLTLTEDDYLVYTFNRFEACRFGLEGTCVNPQTGERRTIAEDILDTLDRIAPH
AAELGSRAALDEIGALAKARVNDASWLRTVFKQEKSLNETVRQQCLRWRE

Specific function: ATP-dependent carboxylate-amine ligase [H]

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family [H]

Homologues:

Organism=Escherichia coli, GI1786795, Length=369, Percent_Identity=45.2574525745258, Blast_Score=352, Evalue=2e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011793
- InterPro:   IPR006336 [H]

Pfam domain/function: PF04107 GCS2 [H]

EC number: NA

Molecular weight: Translated: 41813; Mature: 41682

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALETFVNSEPFTFGVELEIQVVNTHNYDLTKAASDLMRLIQGETFPGNITPEITESMIE
CCCCHHCCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
LSTGICHTHEQALGELHAIRDVLVKAADQLNVGLAGGGTHAFQQWSDRQIYDAPRFQYLS
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHCCCCCCCCCCHHHHHHH
ELYGYLAKQFTVFGQHVHIGCPDPDSALFLLHSMSRFIPHFIALSASSPFVQNVDTGFHS
HHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHH
ARLNSVFAFPLSGRAPFALTWHDFEEYFTKMVNTGVVNSMKDFYWDIRPKPGYGTIEVRV
HHCCCEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEE
MDTPLSVDRAAAIACYIQTLARYLLIDRPLTLTEDDYLVYTFNRFEACRFGLEGTCVNPQ
ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEEEEEECHHHHHHCCCCCEECCCC
TGERRTIAEDILDTLDRIAPHAAELGSRAALDEIGALAKARVNDASWLRTVFKQEKSLNE
CCCHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
TVRQQCLRWRE
HHHHHHHHCCC
>Mature Secondary Structure 
ALETFVNSEPFTFGVELEIQVVNTHNYDLTKAASDLMRLIQGETFPGNITPEITESMIE
CCCHHCCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
LSTGICHTHEQALGELHAIRDVLVKAADQLNVGLAGGGTHAFQQWSDRQIYDAPRFQYLS
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHCCCCCCCCCCHHHHHHH
ELYGYLAKQFTVFGQHVHIGCPDPDSALFLLHSMSRFIPHFIALSASSPFVQNVDTGFHS
HHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHH
ARLNSVFAFPLSGRAPFALTWHDFEEYFTKMVNTGVVNSMKDFYWDIRPKPGYGTIEVRV
HHCCCEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEE
MDTPLSVDRAAAIACYIQTLARYLLIDRPLTLTEDDYLVYTFNRFEACRFGLEGTCVNPQ
ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEEEEEECHHHHHHCCCCCEECCCC
TGERRTIAEDILDTLDRIAPHAAELGSRAALDEIGALAKARVNDASWLRTVFKQEKSLNE
CCCHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
TVRQQCLRWRE
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA