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The map label for this gene is ywbI [H]

Identifier: 161523227

GI number: 161523227

Start: 50477

End: 51403

Strand: Direct

Name: ywbI [H]

Synonym: Bmul_0047

Alternate gene names: 161523227

Gene position: 50477-51403 (Clockwise)

Preceding gene: 161523217

Following gene: 161523230

Centisome position: 1.46

GC content: 69.36

Gene sequence:

>927_bases
ATGGAATTGCGCGCGCTGCGGTACTTCATCGAGGTCGTCCGCCAACAGAGCTTCACCGCGGCCGCCGACAAGCTGTTCGT
CACGCAGCCGACCATCAGCAAGATGGTGAAGGCGCTCGAGGACGAAATCGGCTCGCCGCTGCTTTTGCGCGACGGCCGGC
AGATGGTGCTGACGGACGCGGGGCGGATCGTGTTCCAGCGCGGGCAGGACGTGCTGGCCGCGCAGGCGCAGTTGCAGTCG
GAACTGAACGACCTTGGCACGCTCGGCCGCGGCGAGCTGACGATCGGCATTCCGCCGCTCGGCGGGTCGCTGTTCACGCC
GATCATCGCCGCATACAAACAGCGCTATCCGAATATCGAGCTGAAGCTGTTCGAGCAGGGCGCGCGGATGATCGAGGCGG
CGCTGATGTCGGGCGAGCTGGAGCTGGGCGGGCTGCTCGAGCCGGTCGATCCGGCCACGTTCGAGCGGCTGCCGATGGTG
CGCGCGCCGCTCTGGCTCGTCGCACCGCGCGAATCGCGCTGGGAGGACCACGCGGCCGTGCCGCTCGCGGATCTCGCGCG
CGAATCGTTCGTCTTCTATGCGGAAAGCCTTGCGCTGCACGACGCGGTGCTCGACGCCTGCCGGCAGGCCGGCTTCACGC
CGTCGATCGTGAGCCGCAGCGGGCACTGGGATTTCATGGCCGCGCTCGTGCATGCGGGCGTCGGCATCGCGCTGCTGCCG
GAGCCGTACTGCCGGCGGCTCGATGCAGGGCAGTTCACGTGCCGGCCGATCGTCGAACCGGAGATCATGTGGGCGATCGC
GCTCGGCTGGGTGAAGAAGGGCTATCTGTCGCACGCGGCGCGCGCGTGGCTCGAGGTCGCGCGCGCGACGCTGCCGATCG
CGCCGGGAGACGACCTGGCGTTCGGCGGCTTGCGGGCGCGGGAGTGA

Upstream 100 bases:

>100_bases
TATAGGATTCCCTCATCCATAAATAAAATGACTTGTCTCTATTCTTCTCATTCCGATTCGGAATTCATTCGTTCATTTGC
ACCATTTTGGGGAGTCGCCG

Downstream 100 bases:

>100_bases
CGCGGTTCGATTTGGATTCGAACCGACTTTGGCCGAAGCGACGCCAACGGCCAGACGACACAGGACACGTCCCGCGGGCG
ATGGACCGTCAATGCCCCAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MELRALRYFIEVVRQQSFTAAADKLFVTQPTISKMVKALEDEIGSPLLLRDGRQMVLTDAGRIVFQRGQDVLAAQAQLQS
ELNDLGTLGRGELTIGIPPLGGSLFTPIIAAYKQRYPNIELKLFEQGARMIEAALMSGELELGGLLEPVDPATFERLPMV
RAPLWLVAPRESRWEDHAAVPLADLARESFVFYAESLALHDAVLDACRQAGFTPSIVSRSGHWDFMAALVHAGVGIALLP
EPYCRRLDAGQFTCRPIVEPEIMWAIALGWVKKGYLSHAARAWLEVARATLPIAPGDDLAFGGLRARE

Sequences:

>Translated_308_residues
MELRALRYFIEVVRQQSFTAAADKLFVTQPTISKMVKALEDEIGSPLLLRDGRQMVLTDAGRIVFQRGQDVLAAQAQLQS
ELNDLGTLGRGELTIGIPPLGGSLFTPIIAAYKQRYPNIELKLFEQGARMIEAALMSGELELGGLLEPVDPATFERLPMV
RAPLWLVAPRESRWEDHAAVPLADLARESFVFYAESLALHDAVLDACRQAGFTPSIVSRSGHWDFMAALVHAGVGIALLP
EPYCRRLDAGQFTCRPIVEPEIMWAIALGWVKKGYLSHAARAWLEVARATLPIAPGDDLAFGGLRARE
>Mature_308_residues
MELRALRYFIEVVRQQSFTAAADKLFVTQPTISKMVKALEDEIGSPLLLRDGRQMVLTDAGRIVFQRGQDVLAAQAQLQS
ELNDLGTLGRGELTIGIPPLGGSLFTPIIAAYKQRYPNIELKLFEQGARMIEAALMSGELELGGLLEPVDPATFERLPMV
RAPLWLVAPRESRWEDHAAVPLADLARESFVFYAESLALHDAVLDACRQAGFTPSIVSRSGHWDFMAALVHAGVGIALLP
EPYCRRLDAGQFTCRPIVEPEIMWAIALGWVKKGYLSHAARAWLEVARATLPIAPGDDLAFGGLRARE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=287, Percent_Identity=30.3135888501742, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI157672245, Length=296, Percent_Identity=29.0540540540541, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1790399, Length=274, Percent_Identity=30.6569343065693, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788887, Length=297, Percent_Identity=29.6296296296296, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI2367136, Length=248, Percent_Identity=27.0161290322581, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788297, Length=249, Percent_Identity=25.7028112449799, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788748, Length=298, Percent_Identity=28.8590604026846, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI145693105, Length=280, Percent_Identity=23.2142857142857, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1789506, Length=306, Percent_Identity=21.8954248366013, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787530, Length=245, Percent_Identity=25.7142857142857, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI145693193, Length=123, Percent_Identity=34.1463414634146, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786401, Length=142, Percent_Identity=32.3943661971831, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790208, Length=249, Percent_Identity=26.9076305220884, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788296, Length=244, Percent_Identity=23.3606557377049, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789173, Length=262, Percent_Identity=27.8625954198473, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1787806, Length=246, Percent_Identity=24.390243902439, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787601, Length=148, Percent_Identity=29.7297297297297, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33886; Mature: 33886

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELRALRYFIEVVRQQSFTAAADKLFVTQPTISKMVKALEDEIGSPLLLRDGRQMVLTDA
CCHHHHHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHCCCEEEECCCEEEEECC
GRIVFQRGQDVLAAQAQLQSELNDLGTLGRGELTIGIPPLGGSLFTPIIAAYKQRYPNIE
CHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCE
LKLFEQGARMIEAALMSGELELGGLLEPVDPATFERLPMVRAPLWLVAPRESRWEDHAAV
EEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCHHHCCEEEECCCCCCCCCCCCC
PLADLARESFVFYAESLALHDAVLDACRQAGFTPSIVSRSGHWDFMAALVHAGVGIALLP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHCCCCEEECC
EPYCRRLDAGQFTCRPIVEPEIMWAIALGWVKKGYLSHAARAWLEVARATLPIAPGDDLA
CHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
FGGLRARE
CCCCCCCC
>Mature Secondary Structure
MELRALRYFIEVVRQQSFTAAADKLFVTQPTISKMVKALEDEIGSPLLLRDGRQMVLTDA
CCHHHHHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHCCCEEEECCCEEEEECC
GRIVFQRGQDVLAAQAQLQSELNDLGTLGRGELTIGIPPLGGSLFTPIIAAYKQRYPNIE
CHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCE
LKLFEQGARMIEAALMSGELELGGLLEPVDPATFERLPMVRAPLWLVAPRESRWEDHAAV
EEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCHHHCCEEEECCCCCCCCCCCCC
PLADLARESFVFYAESLALHDAVLDACRQAGFTPSIVSRSGHWDFMAALVHAGVGIALLP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHCCCCEEECC
EPYCRRLDAGQFTCRPIVEPEIMWAIALGWVKKGYLSHAARAWLEVARATLPIAPGDDLA
CHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
FGGLRARE
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]