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The map label for this gene is tnpA1 [H]

Identifier: 161510004

GI number: 161510004

Start: 1917920

End: 1918321

Strand: Reverse

Name: tnpA1 [H]

Synonym: USA300HOU_1779

Alternate gene names: 161510004

Gene position: 1918321-1917920 (Counterclockwise)

Preceding gene: 161510005

Following gene: 161510002

Centisome position: 66.77

GC content: 28.86

Gene sequence:

>402_bases
GTGATATATGGAAAAATAAAAAAAGATATAGGGATTATATTGCGTCAATTATGTGAAAGAAAAGGTGTAGAGATAATTGA
AGCAGAGGCATGTAAAGATCATATCCATATGTTAGTTAGTATACCACCCAAACTTGGGGTATCATCATTTGTTGGCTATT
TAAAAGGAAAAAGTAGTTTAATGATATTTGATAGACATGCTAACTTAAAGTATAGATATGGAAATAGAAAGTTTTGGTGT
AAAGGATTTTATGTGGATACAGTAGGTAGAAATAAAAAAGTGATTGAAAATTATATTCGTAATCAATTACAAGAGGATAT
CGTTGCAGACCAAATCTCAATGGAAGAATATTTAGATCCTTTCACTGGAGAGAAAAATAAAAAAAGAAAGAAAAAAGAGT
AA

Upstream 100 bases:

>100_bases
GAGGAGATGCTATTTAATGTCATCTGACACAAACAGTTTAGCACATACAAAATGGAATTGTAAGTAACATATTGTCTTTG
CACCTAAATACAGAAGACAA

Downstream 100 bases:

>100_bases
CCCTTTAGGGTTGCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTA
TAGCCGCAGAACAAACCACC

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MIYGKIKKDIGIILRQLCERKGVEIIEAEACKDHIHMLVSIPPKLGVSSFVGYLKGKSSLMIFDRHANLKYRYGNRKFWC
KGFYVDTVGRNKKVIENYIRNQLQEDIVADQISMEEYLDPFTGEKNKKRKKKE

Sequences:

>Translated_133_residues
MIYGKIKKDIGIILRQLCERKGVEIIEAEACKDHIHMLVSIPPKLGVSSFVGYLKGKSSLMIFDRHANLKYRYGNRKFWC
KGFYVDTVGRNKKVIENYIRNQLQEDIVADQISMEEYLDPFTGEKNKKRKKKE
>Mature_133_residues
MIYGKIKKDIGIILRQLCERKGVEIIEAEACKDHIHMLVSIPPKLGVSSFVGYLKGKSSLMIFDRHANLKYRYGNRKFWC
KGFYVDTVGRNKKVIENYIRNQLQEDIVADQISMEEYLDPFTGEKNKKRKKKE

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG1943

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 17 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002686 [H]

Pfam domain/function: PF01797 Transposase_17 [H]

EC number: NA

Molecular weight: Translated: 15574; Mature: 15574

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYGKIKKDIGIILRQLCERKGVEIIEAEACKDHIHMLVSIPPKLGVSSFVGYLKGKSSL
CCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHEECCCCCCHHHHHHHHCCCCEE
MIFDRHANLKYRYGNRKFWCKGFYVDTVGRNKKVIENYIRNQLQEDIVADQISMEEYLDP
EEEECCCCEEEEECCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHCCC
FTGEKNKKRKKKE
CCCCCCCCCCCCC
>Mature Secondary Structure
MIYGKIKKDIGIILRQLCERKGVEIIEAEACKDHIHMLVSIPPKLGVSSFVGYLKGKSSL
CCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHEECCCCCCHHHHHHHHCCCCEE
MIFDRHANLKYRYGNRKFWCKGFYVDTVGRNKKVIENYIRNQLQEDIVADQISMEEYLDP
EEEECCCCEEEEECCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHCCC
FTGEKNKKRKKKE
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]