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The map label for this gene is arcD1 [H]

Identifier: 161508333

GI number: 161508333

Start: 71552

End: 72973

Strand: Reverse

Name: arcD1 [H]

Synonym: USA300HOU_0069

Alternate gene names: 161508333

Gene position: 72973-71552 (Counterclockwise)

Preceding gene: 161508334

Following gene: 161508332

Centisome position: 2.54

GC content: 33.26

Gene sequence:

>1422_bases
ATGGATGAAAATAAATTAGGTAAAACTTCCTTAATTGGTTTAGTCATAGGCTCTATGATAGGCGGTGGTGCATTCAATAT
CATCTCAGATATGGGTGGCCAAGCTGGTGGACTTGCAATAATTATCGGTTGGATAATAACTGCTATTGGTATGATTTCTC
TTGCTTTCGTATTTCAAAATTTAACAAATGAGCGACCAGATCTTGATGGAGGAATTTATAGTTATGCTCAAACAGGGTTT
GGAGATTTTATTGGTTTTTCAAGTGCTTGGGGATATTGGTTTGCAGCATTTCTAGGTAATGTGGCTTATGCAACCCTATT
AATGTCAGCTGTGGGTAACTTTTTCCCTATATTTAAAGGAGGTAACACACTTCCAAGTATTATCATAGCATCAATTTTAT
TATGGGGTGTACATTTTTTAATACTTAGAGGTGTAGAAACTGCAGCGTTTATAAATAGTATTGTTACAGTAGCTAAATTA
ATACCTATATTTCTAGTTATTATATGCATGATAGTTGTATTCAACTTCAGTACTTTTAAATCCGGTTTTTATGGTATGAC
TAGTGGAAGTGTTGGCGTTTTTAGTTGGGGAGATACAATGGCACAAGTAAAAAGTACTATGTTAGTAACTGTATGGGTAT
TCACAGGGATTGAAGGAGCCGTTGTCTTTTCTGGACGTGCAAAGTCTAAAAAGGATGTAGGAACTGCTACCGTTATTGGT
TTGATTTCTGTGCTAGTCATTTATTTCTTAATGACTGTACTAGCCCAAGGTGTCATTCAGCAGAACCAAATTTCAAAACT
TGCTAATCCATCAATGGCACAAGTATTAGAACATATTGTAGGTCATTGGGGTTCAGTGTTAGTTAATATAGGCTTAATTA
TCTCTGTTTTAGGAGCTTGGTTAGGATGGACATTACTAGCTGGTGAATTACCATTCATTGTAGCTAAAGATGGACTTTTC
CCGAAATGGTTTGCTAAAGAAAATAAGAATAAAGCTCCGGTCAACGCTTTAATTATTACTAATATATTAGTTCAGTTATT
TTTAATTAGTATGTTGTTTACAGATAGTGCCTATCAGTTTGCGTTTTCACTTGCATCAAGTGCAATCTTAATTCCATATA
CACTCAGTGCTTTTTACCAGGTTAAATATACTATTCAAAATAAATCTAAAGCTAATTTAAAACAATGGATAATAGGAATT
ATTGCATCTATTTACACAATTTGGTTGGTTTATGCAGCTGGATTAGATTATTTACTATTAACGATGTTGTTATATATACC
TGGATTACTCGTATACAGCTACGTACAAAGGGATAATAACAAACATTTGACAAAATTGGATTATACGTTATTCATATTCA
TCATTGTACTTGCAATAATAGGAATAGTTCGTTTGATTACAGGTAATATTTCTGTATTTTAA

Upstream 100 bases:

>100_bases
AGAGAAGATATTTAAATTTGAAAGGTGGTAAAAGTCACAAGTAATTCATTCATTAAATCAAATAACAAGATTTTTACCAC
CTTTATTAGGGGAGATTAAT

Downstream 100 bases:

>100_bases
GTTATGATTTAAACTAAGTAATTTTTAAGGGGTTTATAGTTATGTATGAAGAAAATATTTATATTAAAAATTCAGAATAT
GAATTTGATAATAATCTTAA

Product: arginine/ornithine APC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 473

Protein sequence:

>473_residues
MDENKLGKTSLIGLVIGSMIGGGAFNIISDMGGQAGGLAIIIGWIITAIGMISLAFVFQNLTNERPDLDGGIYSYAQTGF
GDFIGFSSAWGYWFAAFLGNVAYATLLMSAVGNFFPIFKGGNTLPSIIIASILLWGVHFLILRGVETAAFINSIVTVAKL
IPIFLVIICMIVVFNFSTFKSGFYGMTSGSVGVFSWGDTMAQVKSTMLVTVWVFTGIEGAVVFSGRAKSKKDVGTATVIG
LISVLVIYFLMTVLAQGVIQQNQISKLANPSMAQVLEHIVGHWGSVLVNIGLIISVLGAWLGWTLLAGELPFIVAKDGLF
PKWFAKENKNKAPVNALIITNILVQLFLISMLFTDSAYQFAFSLASSAILIPYTLSAFYQVKYTIQNKSKANLKQWIIGI
IASIYTIWLVYAAGLDYLLLTMLLYIPGLLVYSYVQRDNNKHLTKLDYTLFIFIIVLAIIGIVRLITGNISVF

Sequences:

>Translated_473_residues
MDENKLGKTSLIGLVIGSMIGGGAFNIISDMGGQAGGLAIIIGWIITAIGMISLAFVFQNLTNERPDLDGGIYSYAQTGF
GDFIGFSSAWGYWFAAFLGNVAYATLLMSAVGNFFPIFKGGNTLPSIIIASILLWGVHFLILRGVETAAFINSIVTVAKL
IPIFLVIICMIVVFNFSTFKSGFYGMTSGSVGVFSWGDTMAQVKSTMLVTVWVFTGIEGAVVFSGRAKSKKDVGTATVIG
LISVLVIYFLMTVLAQGVIQQNQISKLANPSMAQVLEHIVGHWGSVLVNIGLIISVLGAWLGWTLLAGELPFIVAKDGLF
PKWFAKENKNKAPVNALIITNILVQLFLISMLFTDSAYQFAFSLASSAILIPYTLSAFYQVKYTIQNKSKANLKQWIIGI
IASIYTIWLVYAAGLDYLLLTMLLYIPGLLVYSYVQRDNNKHLTKLDYTLFIFIIVLAIIGIVRLITGNISVF
>Mature_473_residues
MDENKLGKTSLIGLVIGSMIGGGAFNIISDMGGQAGGLAIIIGWIITAIGMISLAFVFQNLTNERPDLDGGIYSYAQTGF
GDFIGFSSAWGYWFAAFLGNVAYATLLMSAVGNFFPIFKGGNTLPSIIIASILLWGVHFLILRGVETAAFINSIVTVAKL
IPIFLVIICMIVVFNFSTFKSGFYGMTSGSVGVFSWGDTMAQVKSTMLVTVWVFTGIEGAVVFSGRAKSKKDVGTATVIG
LISVLVIYFLMTVLAQGVIQQNQISKLANPSMAQVLEHIVGHWGSVLVNIGLIISVLGAWLGWTLLAGELPFIVAKDGLF
PKWFAKENKNKAPVNALIITNILVQLFLISMLFTDSAYQFAFSLASSAILIPYTLSAFYQVKYTIQNKSKANLKQWIIGI
IASIYTIWLVYAAGLDYLLLTMLLYIPGLLVYSYVQRDNNKHLTKLDYTLFIFIIVLAIIGIVRLITGNISVF

Specific function: Catalyzes an electroneutral exchange between arginine and ornithine to allow high-efficiency energy conversion in the arginine deiminase pathway [H]

COG id: COG0531

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787890, Length=465, Percent_Identity=43.6559139784946, Blast_Score=376, Evalue=1e-105,
Organism=Escherichia coli, GI2367353, Length=452, Percent_Identity=30.0884955752212, Blast_Score=162, Evalue=4e-41,
Organism=Escherichia coli, GI1786908, Length=456, Percent_Identity=25.219298245614, Blast_Score=93, Evalue=5e-20,
Organism=Escherichia coli, GI1790575, Length=357, Percent_Identity=25.7703081232493, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR004754
- InterPro:   IPR022461 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 51411; Mature: 51411

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9053381; 11792842 [H]