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The map label for this gene is rdgB [C]

Identifier: 161501824

GI number: 161501824

Start: 1495190

End: 1495792

Strand: Reverse

Name: rdgB [C]

Synonym: VV1_1520

Alternate gene names: 161501824

Gene position: 1495792-1495190 (Counterclockwise)

Preceding gene: 27364892

Following gene: 27364890

Centisome position: 45.58

GC content: 49.25

Gene sequence:

>603_bases
ATGAAAAAGATCGTATTAGCCACAGGTAACCAAGGCAAAGTTCGCGAAATGGCAGACCTACTTGCCGATTTCGGTTTTGA
TGTCGTCGCACAAAGCGAATTCAATGTGTCTGAAGTGGCTGAAACGGGCACAACTTTCATTGAAAATGCCATCATCAAGG
CGCGTCACGCAGCTAAAGAGACCGGGCTTGCAGCGATTGCGGATGATTCAGGTTTAGAAGTGGATTTTCTTCAGGGCGCT
CCTGGGATTTACTCTGCACGTTACGCAGGAGAGAAAGCCTCAGATCAAGAGAATTTAGAAAAGCTATTAACAGCGATGGA
AGGTGTGCCAGAAGCGCAACGCACCGCGCGTTTCCATTGTGTGTTGGTGTTGATGCGCCACGAAAACGACCCGACACCCA
TTGTCTGCCACGGCAAATGGGAAGGCCGCATCTTAACGCAAGCACACGGTGACAATGGCTTTGGCTACGATCCAATCTTC
TTCGTCCCAGAAGACAACTGCGCTTCTGCCGAGCTTGAACCTGTGCGCAAGAAACAACTCTCTCATCGTGGCAAAGCATT
GAAACAGCTTTTTGCTACGCTACGTGAACAACCTTTGGTGTAA

Upstream 100 bases:

>100_bases
GAGACCCTGACCTTCGATCTGGATGTCAACGCAGGCATCAAAGGCGCAGGCAAACTCAAATTTACCCAAAAGTTTTATGT
TGAAGAATAACGAGAACACC

Downstream 100 bases:

>100_bases
GGTGCTCGCATGTTAACGCCCCCTGCACTCAGTTTGTATGTTCACATCCCATGGTGTGTACAAAAGTGCCCTTATTGCGA
CTTCAACTCTCACGCGCTCA

Product: dITP/XTP pyrophosphatase

Products: NA

Alternate protein names: Nucleoside triphosphate phosphohydrolase; NTPase [H]

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MKKIVLATGNQGKVREMADLLADFGFDVVAQSEFNVSEVAETGTTFIENAIIKARHAAKETGLAAIADDSGLEVDFLQGA
PGIYSARYAGEKASDQENLEKLLTAMEGVPEAQRTARFHCVLVLMRHENDPTPIVCHGKWEGRILTQAHGDNGFGYDPIF
FVPEDNCASAELEPVRKKQLSHRGKALKQLFATLREQPLV

Sequences:

>Translated_200_residues
MKKIVLATGNQGKVREMADLLADFGFDVVAQSEFNVSEVAETGTTFIENAIIKARHAAKETGLAAIADDSGLEVDFLQGA
PGIYSARYAGEKASDQENLEKLLTAMEGVPEAQRTARFHCVLVLMRHENDPTPIVCHGKWEGRILTQAHGDNGFGYDPIF
FVPEDNCASAELEPVRKKQLSHRGKALKQLFATLREQPLV
>Mature_200_residues
MKKIVLATGNQGKVREMADLLADFGFDVVAQSEFNVSEVAETGTTFIENAIIKARHAAKETGLAAIADDSGLEVDFLQGA
PGIYSARYAGEKASDQENLEKLLTAMEGVPEAQRTARFHCVLVLMRHENDPTPIVCHGKWEGRILTQAHGDNGFGYDPIF
FVPEDNCASAELEPVRKKQLSHRGKALKQLFATLREQPLV

Specific function: Hydrolyzes non-standard nucleotides such as XTP and dITP/ITP. Might exclude non-standard purines from DNA precursor pool, preventing thus incorporation into DNA and avoiding chromosomal lesions [H]

COG id: COG0127

COG function: function code F; Xanthosine triphosphate pyrophosphatase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAM1 NTPase family [H]

Homologues:

Organism=Escherichia coli, GI1789324, Length=195, Percent_Identity=64.6153846153846, Blast_Score=264, Evalue=2e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002637
- InterPro:   IPR020922 [H]

Pfam domain/function: PF01725 Ham1p_like [H]

EC number: =3.6.1.15 [H]

Molecular weight: Translated: 21924; Mature: 21924

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIVLATGNQGKVREMADLLADFGFDVVAQSEFNVSEVAETGTTFIENAIIKARHAAKE
CCEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TGLAAIADDSGLEVDFLQGAPGIYSARYAGEKASDQENLEKLLTAMEGVPEAQRTARFHC
CCCEEEECCCCCEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
VLVLMRHENDPTPIVCHGKWEGRILTQAHGDNGFGYDPIFFVPEDNCASAELEPVRKKQL
EEEEEECCCCCCCEEEECCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHHH
SHRGKALKQLFATLREQPLV
HHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKKIVLATGNQGKVREMADLLADFGFDVVAQSEFNVSEVAETGTTFIENAIIKARHAAKE
CCEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TGLAAIADDSGLEVDFLQGAPGIYSARYAGEKASDQENLEKLLTAMEGVPEAQRTARFHC
CCCEEEECCCCCEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
VLVLMRHENDPTPIVCHGKWEGRILTQAHGDNGFGYDPIFFVPEDNCASAELEPVRKKQL
EEEEEECCCCCCCEEEECCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHHH
SHRGKALKQLFATLREQPLV
HHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]