| Definition | Corynebacterium glutamicum ATCC 13032, complete genome. |
|---|---|
| Accession | NC_006958 |
| Length | 3,282,708 |
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The map label for this gene is mutM1 [H]
Identifier: 161486717
GI number: 161486717
Start: 2158342
End: 2159202
Strand: Reverse
Name: mutM1 [H]
Synonym: cg2272
Alternate gene names: 161486717
Gene position: 2159202-2158342 (Counterclockwise)
Preceding gene: 62390909
Following gene: 62390907
Centisome position: 65.78
GC content: 54.36
Gene sequence:
>861_bases GTGCCTGAACTGCCTGAAGTTGAGGTGGTGCGCCGCGGTTTAGAAGATCATATGGTCGGCCACACCATCGTGTCCGCCAC AGTGCTTCACCCGCGCGCAGCCCGCAATCAACTCGGCGGTGGCCCCGAAATCGAGGCCAACATCGCAGGGCTTAGGGTCA GCGCTGCCAAGCGACGCGGCAAATTCCTCTGGCTTGAGCTTATCGACGCACCCTCCGGCGAAACCCGTCCCGATTTAGGG CTACTGGTTCACCTTGGGATGAGTGGACAAATGCTCATCAAAGAACCAGATGCACCAATTAGTCCACACCTTCGAGCCAA AGTCGAGCTAGATAATGGCGATGAAGTGTGGTTTGTCGATCAACGCACCTTCGGTTATTGGTGGCTCGGCGACCTAGTTG ATGGAGTACCCGAACGCGTCTCTCACATTGCCACAGATGTATTGGATGAGTCTGCTGATTTCTCTGCGATTGCGCGGAAT TTGAAATCTCGGAAATCGGAGATCAAACGCCTCCTGCTTAACCAAGAGATCGTCTCCGGCATCGGAAATATCTATGCCGA TGAAATGCTCTGGCAAGCAAAAATTCACCCATTGCAACGTGCCGATCGACTGTCCCTAGCTCGCTTGGAAGAACTTCTTC AAGCTGGCAAAGACGTGATGACCAAAGCACTTGCTCAAGGTGGCACCTCTTTCGACGCGCTCTATGTCAACGTCAATGGC AACTCCGGCTACTTTGCGCTGTCATTGAATGCTTATGCGCAAACCGGGGAGCCGTGCGGACGCTGCGGAACATTAATCAT CCGGGAGAGTTTCATGAACCGCGGCTCCCACTACTGCCCAAACTGCCAGAAGCGGCGCTAG
Upstream 100 bases:
>100_bases ACGCTGGAAGGTGAAGAAATGGGTCGGGGAGAAGGCCCGAACAAGAAGCTGGCCGAGCAGGAAGCAGCGCACCAGGCATT CCGAAAGCTTCGGGAGTCCC
Downstream 100 bases:
>100_bases CTGATGAGCGAAGCTTTTGATGCAACCAAAGTGCGCAAAGCTGTGCTCACCGTCGCGCTGCTTAACTTCGCTTATTTCTT TGTAGAATTCTTTATTGCAT
Product: formamidopyrimidine-DNA glycosylase
Products: NA
Alternate protein names: Fapy-DNA glycosylase; DNA-(apurinic or apyrimidinic site) lyase mutM; AP lyase mutM [H]
Number of amino acids: Translated: 286; Mature: 285
Protein sequence:
>286_residues MPELPEVEVVRRGLEDHMVGHTIVSATVLHPRAARNQLGGGPEIEANIAGLRVSAAKRRGKFLWLELIDAPSGETRPDLG LLVHLGMSGQMLIKEPDAPISPHLRAKVELDNGDEVWFVDQRTFGYWWLGDLVDGVPERVSHIATDVLDESADFSAIARN LKSRKSEIKRLLLNQEIVSGIGNIYADEMLWQAKIHPLQRADRLSLARLEELLQAGKDVMTKALAQGGTSFDALYVNVNG NSGYFALSLNAYAQTGEPCGRCGTLIIRESFMNRGSHYCPNCQKRR
Sequences:
>Translated_286_residues MPELPEVEVVRRGLEDHMVGHTIVSATVLHPRAARNQLGGGPEIEANIAGLRVSAAKRRGKFLWLELIDAPSGETRPDLG LLVHLGMSGQMLIKEPDAPISPHLRAKVELDNGDEVWFVDQRTFGYWWLGDLVDGVPERVSHIATDVLDESADFSAIARN LKSRKSEIKRLLLNQEIVSGIGNIYADEMLWQAKIHPLQRADRLSLARLEELLQAGKDVMTKALAQGGTSFDALYVNVNG NSGYFALSLNAYAQTGEPCGRCGTLIIRESFMNRGSHYCPNCQKRR >Mature_285_residues PELPEVEVVRRGLEDHMVGHTIVSATVLHPRAARNQLGGGPEIEANIAGLRVSAAKRRGKFLWLELIDAPSGETRPDLGL LVHLGMSGQMLIKEPDAPISPHLRAKVELDNGDEVWFVDQRTFGYWWLGDLVDGVPERVSHIATDVLDESADFSAIARNL KSRKSEIKRLLLNQEIVSGIGNIYADEMLWQAKIHPLQRADRLSLARLEELLQAGKDVMTKALAQGGTSFDALYVNVNGN SGYFALSLNAYAQTGEPCGRCGTLIIRESFMNRGSHYCPNCQKRR
Specific function: Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyr
COG id: COG0266
COG function: function code L; Formamidopyrimidine-DNA glycosylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FPG-type zinc finger [H]
Homologues:
Organism=Escherichia coli, GI1790066, Length=284, Percent_Identity=35.9154929577465, Blast_Score=169, Evalue=1e-43, Organism=Escherichia coli, GI1786932, Length=292, Percent_Identity=23.972602739726, Blast_Score=73, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015886 - InterPro: IPR015887 - InterPro: IPR000191 - InterPro: IPR012319 - InterPro: IPR020629 - InterPro: IPR010979 - InterPro: IPR000214 - InterPro: IPR010663 [H]
Pfam domain/function: PF01149 Fapy_DNA_glyco; PF06831 H2TH; PF06827 zf-FPG_IleRS [H]
EC number: =3.2.2.23; =4.2.99.18 [H]
Molecular weight: Translated: 31649; Mature: 31517
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: PS01242 ZF_FPG_1 ; PS51066 ZF_FPG_2 ; PS51068 FPG_CAT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPELPEVEVVRRGLEDHMVGHTIVSATVLHPRAARNQLGGGPEIEANIAGLRVSAAKRRG CCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEECEEEEHHHHHCC KFLWLELIDAPSGETRPDLGLLVHLGMSGQMLIKEPDAPISPHLRAKVELDNGDEVWFVD CEEEEEEEECCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCEEEEEEECCCCEEEEEE QRTFGYWWLGDLVDGVPERVSHIATDVLDESADFSAIARNLKSRKSEIKRLLLNQEIVSG CCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH IGNIYADEMLWQAKIHPLQRADRLSLARLEELLQAGKDVMTKALAQGGTSFDALYVNVNG HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC NSGYFALSLNAYAQTGEPCGRCGTLIIRESFMNRGSHYCPNCQKRR CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure PELPEVEVVRRGLEDHMVGHTIVSATVLHPRAARNQLGGGPEIEANIAGLRVSAAKRRG CCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEECEEEEHHHHHCC KFLWLELIDAPSGETRPDLGLLVHLGMSGQMLIKEPDAPISPHLRAKVELDNGDEVWFVD CEEEEEEEECCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCEEEEEEECCCCEEEEEE QRTFGYWWLGDLVDGVPERVSHIATDVLDESADFSAIARNLKSRKSEIKRLLLNQEIVSG CCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH IGNIYADEMLWQAKIHPLQRADRLSLARLEELLQAGKDVMTKALAQGGTSFDALYVNVNG HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC NSGYFALSLNAYAQTGEPCGRCGTLIIRESFMNRGSHYCPNCQKRR CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA