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The map label for this gene is caiF

Identifier: 161486554

GI number: 161486554

Start: 33216

End: 33611

Strand: Direct

Name: caiF

Synonym: S0033

Alternate gene names: 161486554

Gene position: 33216-33611 (Clockwise)

Preceding gene: 30061601

Following gene: 161486553

Centisome position: 0.72

GC content: 45.96

Gene sequence:

>396_bases
ATGTGTGAAGGATATGTTGAAAAACCACTCTACTTGTTAATCGCCGAATGGATGATGGCTGAAAATCGGTGGGTGATAGC
AAGAGAGATCTCTATTCATTTCGATATTGAACACAGCAAGGCGGTTAATACCCTGACTTATATTCTGTCGGAAGTCACAG
AAATAAGCTGCGAAGTTAAGATGATCCCTAATAAGCTGGAAGGGCGGGGATGCCAGTGTCAGCGACTGGTTAAAGTGGTC
GATATCGATGAGCAAATTTACGCGCGCCTGCGCAATAACAGTCGGGAAAAATTAGTCGGCGTAAGAAAGACACCGCGTAT
TCCTGCCGTTCCGCTCACGGAACTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAA

Upstream 100 bases:

>100_bases
GTTGCATACTATCGATATATCCACAATTTTAATATGGCCTTGTTTAATTGCTTCAAAACGAGTCATAGCTAGACTTTTAA
TTTGTGAAACTGGAGTTCGT

Downstream 100 bases:

>100_bases
TTTTATCTCGTTGATACCGGGCGTCCTGCTTGCCAGATACGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCATCCGG
CAAGATCACCGTTTAGGCGT

Product: DNA-binding transcriptional activator CaiF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEGRGCQCQRLVKVV
DIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR

Sequences:

>Translated_131_residues
MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEGRGCQCQRLVKVV
DIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR
>Mature_131_residues
MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEGRGCQCQRLVKVV
DIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR

Specific function: Potential transcriptional activator of carnitine metabolism

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081680, Length=131, Percent_Identity=100, Blast_Score=269, Evalue=4e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CAIF_ECOLI (P0AE58)

Other databases:

- EMBL:   X80644
- EMBL:   U00096
- EMBL:   AP009048
- RefSeq:   AP_000698.1
- RefSeq:   NP_414576.4
- STRING:   P0AE58
- EnsemblBacteria:   EBESCT00000004609
- EnsemblBacteria:   EBESCT00000014397
- GeneID:   944795
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW0033
- KEGG:   eco:b0034
- EchoBASE:   EB3224
- EcoGene:   EG13451
- eggNOG:   NOG12280
- GeneTree:   EBGT00050000011525
- HOGENOM:   HBG416703
- OMA:   QLEGRGC
- ProtClustDB:   PRK11476
- BioCyc:   EcoCyc:G6088-MONOMER
- Genevestigator:   P0AE58
- GO:   GO:0006350
- InterPro:   IPR020357
- ProDom:   PD081346

Pfam domain/function: PF07180 DUF1401

EC number: NA

Molecular weight: Translated: 15436; Mature: 15436

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
8.4 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
8.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVK
CCCCCHHCCHHHHHHHHHHCCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHEEEE
MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQK
ECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHCCHHHH
WQMMLSKSMRR
HHHHHHHHHCC
>Mature Secondary Structure
MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVK
CCCCCHHCCHHHHHHHHHHCCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHEEEE
MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQK
ECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHCCHHHH
WQMMLSKSMRR
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8631699; 9278503