| Definition | Shigella flexneri 2a str. 2457T, complete genome. |
|---|---|
| Accession | NC_004741 |
| Length | 4,599,354 |
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The map label for this gene is yacL
Identifier: 161486548
GI number: 161486548
Start: 132125
End: 132487
Strand: Direct
Name: yacL
Synonym: S0118
Alternate gene names: 161486548
Gene position: 132125-132487 (Clockwise)
Preceding gene: 30061683
Following gene: 30061688
Centisome position: 2.87
GC content: 52.07
Gene sequence:
>363_bases ATGGATTACGAATTTCTGCGCGATATTACCGGAGTGGTAAAGGTGCGTATGTCCATGGGGCATGAAGTGGTCGGGCACTG GTTTAATGAAGAGGTGAAAGAAAACCTGGCCTTGCTTGATGAAGTGGAACAAGCAGCGCACGCACTGAAAGGTAGCGAAC GGTCCTGGCAACGGGCAGGGCATGAATACACCCTGTGGATGGACGCTGAAGAGGTGATGGTTCGCGCCAATCAACTGGAA TTCGCTGGCGATGAAATGGAAGAGGGGATGAACTACTACGACGAAGAAAGCCTGTCGCTATGCGGCGTTGAGGATTTTCT GCAGGTCGTGGCGGCTTACCGCAATTTCGTGCAGCAGAAGTAA
Upstream 100 bases:
>100_bases AACTATCGCCGTTCCGCTGTTTTTCTCCGGTAAGGCTGCGATAATTACATCAATGGCGCGATGCGATTTCGGCGCATTGC CGGGAGCAGAGGAACACACT
Downstream 100 bases:
>100_bases ATAAATCTGGCGGAGCCTGGGAGCTCCGCCAGAGCCGTTAAACAGCTGGCATATTGCGCCCGTAATAAATCTCGCGCATT TCTTTCCACAGCGCAGCGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 120; Mature: 120
Protein sequence:
>120_residues MDYEFLRDITGVVKVRMSMGHEVVGHWFNEEVKENLALLDEVEQAAHALKGSERSWQRAGHEYTLWMDAEEVMVRANQLE FAGDEMEEGMNYYDEESLSLCGVEDFLQVVAAYRNFVQQK
Sequences:
>Translated_120_residues MDYEFLRDITGVVKVRMSMGHEVVGHWFNEEVKENLALLDEVEQAAHALKGSERSWQRAGHEYTLWMDAEEVMVRANQLE FAGDEMEEGMNYYDEESLSLCGVEDFLQVVAAYRNFVQQK >Mature_120_residues MDYEFLRDITGVVKVRMSMGHEVVGHWFNEEVKENLALLDEVEQAAHALKGSERSWQRAGHEYTLWMDAEEVMVRANQLE FAGDEMEEGMNYYDEESLSLCGVEDFLQVVAAYRNFVQQK
Specific function: Unknown
COG id: COG3112
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0231 family [H]
Homologues:
Organism=Escherichia coli, GI87081687, Length=120, Percent_Identity=99.1666666666667, Blast_Score=243, Evalue=2e-66,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008249 - ProDom: PD020773 [H]
Pfam domain/function: PF06062 UPF0231 [H]
EC number: NA
Molecular weight: Translated: 13956; Mature: 13956
Theoretical pI: Translated: 4.16; Mature: 4.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 5.8 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 5.8 %Met (Mature Protein) 6.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDYEFLRDITGVVKVRMSMGHEVVGHWFNEEVKENLALLDEVEQAAHALKGSERSWQRAG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCC HEYTLWMDAEEVMVRANQLEFAGDEMEEGMNYYDEESLSLCGVEDFLQVVAAYRNFVQQK CCEEEEECHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MDYEFLRDITGVVKVRMSMGHEVVGHWFNEEVKENLALLDEVEQAAHALKGSERSWQRAG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCC HEYTLWMDAEEVMVRANQLEFAGDEMEEGMNYYDEESLSLCGVEDFLQVVAAYRNFVQQK CCEEEEECHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA