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The map label for this gene is ycbO

Identifier: 161486517

GI number: 161486517

Start: 986680

End: 987639

Strand: Reverse

Name: ycbO

Synonym: S1000

Alternate gene names: 161486517

Gene position: 987639-986680 (Counterclockwise)

Preceding gene: 30062473

Following gene: 30062471

Centisome position: 21.47

GC content: 52.5

Gene sequence:

>960_bases
ATGCGTAACATCATTAAACTGGCGCTGGCGGGATTGCTTAGCGTCTCTACTTTTGCGGTTGCTGCAGAATCCTCGCCTGA
AGCGTTACGTATAGGCTATCAGAAAGGCAGTATTGGTATGGTGCTGGCAAAAAGCCACCAGTTACTGGAAAAACGCTATC
CGCAATCAAAAATCTCCTGGGTGGAGTTCCCCGCGGGTCCGCAAATGTTGGAAGCGTTAAACGTTGGCAGTATTGATCTC
GGCAGTACCGGGGATATTCCGCCAATCTTTGCCCAGGCTGCCGGGGCTGATTTGGTATATGTGGGCGTCGAGCCACCGAA
GCCCAAAGCCGAAGTGATTCTGGTGGCAGAAAACAGCCCGATCAAAACCGTAGCCGATCTTAAAGGTCACAAAGTTGCCT
TTCAGAAAGGTTCCAGTTCACACAACCTTTTACTGCGTGCACTGCGTCAGGCCGGACTTAAATTCACCGATATCCAGCCC
ACTTACCTGACGCCTGCCGATGCCCGCGCCGCGTTCCAGCAAGGTAACGTTGACGCCTGGGCTATCTGGGATCCCTACTA
CTCCGCTGCGTTATTACAGGGCGGCGTGCGGGTGCTGAAAGACGGCACCGATCTCAATCAAACTGGATCGTTTTATCTGG
CAGCTCGTCCCTATGCAGAAAAAAACGGCGCTTTTATTCAGGGCGTACTGGCAACCTTTAGTGAGGCCGATGCGTTAACC
CGCAGCCAGCGCGAACAAAGCATCGCTTTACTGGCAAAAACGATGGGCTTACCGGCACCGGTGATTGCCTCTTACTTAGA
TCATCGCCCTCCTACCACCATCAAACCGGTTAACGCCGAGGTTGCCGCCTTACAGCAGCAAACGGCAGATCTGTTTTATG
AAAACCGTCTGGTGCCGAAAAAAGTCGATATTCGCCAGCGCATCTGGCAGCCCACTCAACTGGAAGGAAAACAATTATGA

Upstream 100 bases:

>100_bases
CTGCAAACCCATCTTGATACCGCGCTAGAAACTTTCTGGCAGGCATTGCACCGCCGCGATGTTCAGGTTCCTGACCTTCT
GTCTCTGCGAGGTAATGCCC

Downstream 100 bases:

>100_bases
GTCTGAATATGTTCTGGTTTTTACCGACCCACGGTGACGGGCACTATCTGGGAACGGAAGAAGGTTCACGCCCGGTTGAT
CACGGTTATCTGCAACAAAT

Product: alkanesulfonate transporter substrate-binding subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MRNIIKLALAGLLSVSTFAVAAESSPEALRIGYQKGSIGMVLAKSHQLLEKRYPQSKISWVEFPAGPQMLEALNVGSIDL
GSTGDIPPIFAQAAGADLVYVGVEPPKPKAEVILVAENSPIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQP
TYLTPADARAAFQQGNVDAWAIWDPYYSAALLQGGVRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALT
RSQREQSIALLAKTMGLPAPVIASYLDHRPPTTIKPVNAEVAALQQQTADLFYENRLVPKKVDIRQRIWQPTQLEGKQL

Sequences:

>Translated_319_residues
MRNIIKLALAGLLSVSTFAVAAESSPEALRIGYQKGSIGMVLAKSHQLLEKRYPQSKISWVEFPAGPQMLEALNVGSIDL
GSTGDIPPIFAQAAGADLVYVGVEPPKPKAEVILVAENSPIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQP
TYLTPADARAAFQQGNVDAWAIWDPYYSAALLQGGVRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALT
RSQREQSIALLAKTMGLPAPVIASYLDHRPPTTIKPVNAEVAALQQQTADLFYENRLVPKKVDIRQRIWQPTQLEGKQL
>Mature_319_residues
MRNIIKLALAGLLSVSTFAVAAESSPEALRIGYQKGSIGMVLAKSHQLLEKRYPQSKISWVEFPAGPQMLEALNVGSIDL
GSTGDIPPIFAQAAGADLVYVGVEPPKPKAEVILVAENSPIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQP
TYLTPADARAAFQQGNVDAWAIWDPYYSAALLQGGVRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALT
RSQREQSIALLAKTMGLPAPVIASYLDHRPPTTIKPVNAEVAALQQQTADLFYENRLVPKKVDIRQRIWQPTQLEGKQL

Specific function: Part of a binding-protein-dependent transport system for aliphatic sulfonates. Putative binding protein [H]

COG id: COG0715

COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein ssuA/tauA family [H]

Homologues:

Organism=Escherichia coli, GI87081803, Length=319, Percent_Identity=99.6865203761756, Blast_Score=645, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010067
- InterPro:   IPR015168
- InterPro:   IPR001638 [H]

Pfam domain/function: PF09084 NMT1 [H]

EC number: NA

Molecular weight: Translated: 34557; Mature: 34557

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNIIKLALAGLLSVSTFAVAAESSPEALRIGYQKGSIGMVLAKSHQLLEKRYPQSKISW
CCHHHHHHHHHHHHHHHHEEECCCCCCEEEEEECCCCEEEEEHHHHHHHHHHCCCCCCCE
VEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVGVEPPKPKAEVILVAENSP
EECCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCC
IKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGNVDAW
CCHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCEEECCCCCEECCHHHHHHHHCCCCCEE
AIWDPYYSAALLQGGVRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALT
EEECHHHHHHHHHCCHHEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
RSQREQSIALLAKTMGLPAPVIASYLDHRPPTTIKPVNAEVAALQQQTADLFYENRLVPK
HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
KVDIRQRIWQPTQLEGKQL
HHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MRNIIKLALAGLLSVSTFAVAAESSPEALRIGYQKGSIGMVLAKSHQLLEKRYPQSKISW
CCHHHHHHHHHHHHHHHHEEECCCCCCEEEEEECCCCEEEEEHHHHHHHHHHCCCCCCCE
VEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVGVEPPKPKAEVILVAENSP
EECCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCC
IKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGNVDAW
CCHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCEEECCCCCEECCHHHHHHHHCCCCCEE
AIWDPYYSAALLQGGVRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALT
EEECHHHHHHHHHCCHHEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
RSQREQSIALLAKTMGLPAPVIASYLDHRPPTTIKPVNAEVAALQQQTADLFYENRLVPK
HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
KVDIRQRIWQPTQLEGKQL
HHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10506196; 8905232; 9278503 [H]