Click here to switch to the map view.

The map label for this gene is dcrB

Identifier: 161486384

GI number: 161486384

Start: 4192969

End: 4193526

Strand: Reverse

Name: dcrB

Synonym: S4273

Alternate gene names: 161486384

Gene position: 4193526-4192969 (Counterclockwise)

Preceding gene: 30065252

Following gene: 30065249

Centisome position: 91.18

GC content: 51.43

Gene sequence:

>558_bases
ATGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGC
TACGGCGCAGGGTTCGGTTGCGGAAAGTAACGCTACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGC
TGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCCACCGGG
CAGAAAGCAGTCATCGTCATCATGGGCGATGATCCGAAAGAAGATCTGGCGGTGTTGGCGAAGCGTCTGGAAGATCAGCA
ACGTAGCCGCGATCCGCAGCTGCAAGTGGTAACCAATAAAGCCATTGAGCTGAAAGGTCACAAAATGCAGCAGTTAGACA
GTATTATCTCCGCGAAAGGCCAGACGGCGTACTCTTCCGTTATTCTGGGTAACGTGGGTAATCAACTGCTGACCATGCAA
ATTACGCTGCCAGCTGACGATCAGCAAAAAGCGCAAACCACCGCAGAAAACATCATTAATACGCTGGTTATTCAGTAA

Upstream 100 bases:

>100_bases
CGAAATCAACGCTTTGCAGGCGAGTTAAAGGTTCGTTATCAGAGTTGTGATAAGATGGATGAATGAGCCGTTATGGCCGT
TTATCGAAAGGAAGAAGTCA

Downstream 100 bases:

>100_bases
GTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCGTTTTTTTAATCGCCACGTCAGTAATAACGCGATTG
CGACCAGTCCCGCCGCCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MRNLVKYVGIGLLVMGLAACDDKDTNATAQGSVAESNATGNPVNLLDGKLSFSLPADMTDQSGKLGTQANNMHVWSDATG
QKAVIVIMGDDPKEDLAVLAKRLEDQQRSRDPQLQVVTNKAIELKGHKMQQLDSIISAKGQTAYSSVILGNVGNQLLTMQ
ITLPADDQQKAQTTAENIINTLVIQ

Sequences:

>Translated_185_residues
MRNLVKYVGIGLLVMGLAACDDKDTNATAQGSVAESNATGNPVNLLDGKLSFSLPADMTDQSGKLGTQANNMHVWSDATG
QKAVIVIMGDDPKEDLAVLAKRLEDQQRSRDPQLQVVTNKAIELKGHKMQQLDSIISAKGQTAYSSVILGNVGNQLLTMQ
ITLPADDQQKAQTTAENIINTLVIQ
>Mature_185_residues
MRNLVKYVGIGLLVMGLAACDDKDTNATAQGSVAESNATGNPVNLLDGKLSFSLPADMTDQSGKLGTQANNMHVWSDATG
QKAVIVIMGDDPKEDLAVLAKRLEDQQRSRDPQLQVVTNKAIELKGHKMQQLDSIISAKGQTAYSSVILGNVGNQLLTMQ
ITLPADDQQKAQTTAENIINTLVIQ

Specific function: Required for phage C1 adsorption

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082269, Length=185, Percent_Identity=100, Blast_Score=373, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DCRB_ECOLI (P0AEE1)

Other databases:

- EMBL:   U00039
- EMBL:   U00096
- EMBL:   AP009048
- RefSeq:   AP_004320.1
- RefSeq:   NP_417929.4
- ProteinModelPortal:   P0AEE1
- DIP:   DIP-36187N
- STRING:   P0AEE1
- SWISS-2DPAGE:   P0AEE1
- EnsemblBacteria:   EBESCT00000002409
- EnsemblBacteria:   EBESCT00000016757
- GeneID:   947983
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW5682
- KEGG:   eco:b3472
- EchoBASE:   EB2132
- EcoGene:   EG12218
- eggNOG:   NOG05750
- GeneTree:   EBGT00050000010720
- HOGENOM:   HBG417148
- OMA:   PADNQQQ
- ProtClustDB:   PRK11615
- BioCyc:   EcoCyc:G7767-MONOMER
- Genevestigator:   P0AEE1
- InterPro:   IPR014894

Pfam domain/function: PF08786 DUF1795

EC number: NA

Molecular weight: Translated: 19788; Mature: 19788

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNLVKYVGIGLLVMGLAACDDKDTNATAQGSVAESNATGNPVNLLDGKLSFSLPADMTD
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCCC
QSGKLGTQANNMHVWSDATGQKAVIVIMGDDPKEDLAVLAKRLEDQQRSRDPQLQVVTNK
CCCCCCCCCCCEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEECC
AIELKGHKMQQLDSIISAKGQTAYSSVILGNVGNQLLTMQITLPADDQQKAQTTAENIIN
EEEECCCHHHHHHHHHHCCCCHHHHHEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHH
TLVIQ
HHHCC
>Mature Secondary Structure
MRNLVKYVGIGLLVMGLAACDDKDTNATAQGSVAESNATGNPVNLLDGKLSFSLPADMTD
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCCC
QSGKLGTQANNMHVWSDATGQKAVIVIMGDDPKEDLAVLAKRLEDQQRSRDPQLQVVTNK
CCCCCCCCCCCEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEECC
AIELKGHKMQQLDSIISAKGQTAYSSVILGNVGNQLLTMQITLPADDQQKAQTTAENIIN
EEEECCCHHHHHHHHHHCCCCHHHHHEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHH
TLVIQ
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 8752353