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The map label for this gene is rarA [H]

Identifier: 161485713

GI number: 161485713

Start: 2351587

End: 2352960

Strand: Direct

Name: rarA [H]

Synonym: XAC2010

Alternate gene names: 161485713

Gene position: 2351587-2352960 (Clockwise)

Preceding gene: 21242752

Following gene: 21242755

Centisome position: 45.44

GC content: 64.92

Gene sequence:

>1374_bases
GTGAGCAAAGCCAAACGTCCCGACTCGATCACACCCGATCTGCTGCATGTCGATCGCAGCGCCATGGGGCCCCTGGCAGA
GCGGATGCGGCCGCGCACGCTTGACGAGATGGTGGGGCAGAAACGATTGCTGGCTCCCGACAGCGCCTTGCGGCGCGCGG
TCGAATCCGGGCGCGTGCACTCGATGATCCTGTGGGGTCCGCCGGGATGCGGCAAGACCACATTGGCCTTGTTGCTGGCG
CACTACGCAGACGCCGAATTCAAGGCGATCTCGGCCGTGCTGTCCGGCCTGCCGGACGTGCGGCAGGTGCTGGCAGAGGC
CGCGCAGCGTTTTGCCGGTGGCCGCCGCACCGTGTTGTTCGTCGATGAGGTGCATCGCTTCAACAAGGCGCAACAGGATG
CGTTCTTGCCGCATATCGAACGCGGCACGATTCTGTTCGTCGGTGCGACCACTGAAAACCCGTCCTTCGAGTTGAACTCA
GCGTTGTTGTCGCGCTGCCGCGTGCATGTGCTGGAAGGCGTGTCGCCGCAGGACATCGTCGAAGCCTTGCAGCGTGCCTT
GCGCGATGCCGAGCGCGGCTTGGGGGCCGAGACGATCCAGGTCAGCGAAGCATCGCTGCTGGAAATCGCCAGCGCCGCCG
ACGGCGATGTGCGTCGGGCCCTGACGCTGTTGGAAATTGCTGCGGAACTGGCGGCAGGCGAGGGTGGCGAGATTACGCCG
CAGACGTTGCTGCAGGTGCTGGCCGACCGTACGCGCCGCTTCGACAAGAACGGCGAGCAGTTCTATGACCAGATTTCGGC
GTTGCACAAGTCCGTGCGCAGCTCCAACCCGGATGCAGCGCTGTACTGGCTGACGCGCATGCTCGATGGCGGGTGCGACC
CGGCGTATTTGGCGCGTCGCTTGACCCGCATGGCGATCGAGGACATTGGCCTGGCCGATCCGCGCGCGCAGAGCATGGCG
CTGGAAGCCTGGGACATCTACGAGCGCCTCGGCAGCCCGGAGGGCGAGTTGGCATTCGCACAGCTGGTGCTGTATCTGGC
CAGCACTGCCAAATCCAACGCCGGCTATGCTGCCTTCAATCAGGCCAAGGCCGAAGTGCGCGCCACCGGCACGCAGGAGG
TGCCGCTGCATCTACGCAACGCACCGACGAAGCTGATGAAGACGCTGGGTTACGGCCAGGATTATCAGTACGACCATCAT
GCCGAGGGCGGTATCGCGCTGGATCAGACCGGCTTCCCGGATGCGATGGGCGAGCGCGTGTACTACAACCCGGTGCCGCG
CGGAATGGAGATCAAGCTGAAGGAAAAGCTCGATCGGCTGCGCGAGGCGCGCGCGCAGGCACGGGCTGACAAGGCCGGCA
AGCCCACGGCATAA

Upstream 100 bases:

>100_bases
CGAAGTGGTCGCTTGGAAAGAGAACGTCGACGTCCCTGCCAGCGACGGCCGAACACTGCGTTGTGGAACGTCCATCAGGC
GCAGGCGGTAGAATAAAGGG

Downstream 100 bases:

>100_bases
TCGGCCGCACAGGAGATGGCATTCCTCCTCGAACCGCACGCACCCGCGCGCTGATGATGCCTGCCCACCCCGCCGGGGCG
GCAGGTCTGTGCCCCGGCAT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 457; Mature: 456

Protein sequence:

>457_residues
MSKAKRPDSITPDLLHVDRSAMGPLAERMRPRTLDEMVGQKRLLAPDSALRRAVESGRVHSMILWGPPGCGKTTLALLLA
HYADAEFKAISAVLSGLPDVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNS
ALLSRCRVHVLEGVSPQDIVEALQRALRDAERGLGAETIQVSEASLLEIASAADGDVRRALTLLEIAAELAAGEGGEITP
QTLLQVLADRTRRFDKNGEQFYDQISALHKSVRSSNPDAALYWLTRMLDGGCDPAYLARRLTRMAIEDIGLADPRAQSMA
LEAWDIYERLGSPEGELAFAQLVLYLASTAKSNAGYAAFNQAKAEVRATGTQEVPLHLRNAPTKLMKTLGYGQDYQYDHH
AEGGIALDQTGFPDAMGERVYYNPVPRGMEIKLKEKLDRLREARAQARADKAGKPTA

Sequences:

>Translated_457_residues
MSKAKRPDSITPDLLHVDRSAMGPLAERMRPRTLDEMVGQKRLLAPDSALRRAVESGRVHSMILWGPPGCGKTTLALLLA
HYADAEFKAISAVLSGLPDVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNS
ALLSRCRVHVLEGVSPQDIVEALQRALRDAERGLGAETIQVSEASLLEIASAADGDVRRALTLLEIAAELAAGEGGEITP
QTLLQVLADRTRRFDKNGEQFYDQISALHKSVRSSNPDAALYWLTRMLDGGCDPAYLARRLTRMAIEDIGLADPRAQSMA
LEAWDIYERLGSPEGELAFAQLVLYLASTAKSNAGYAAFNQAKAEVRATGTQEVPLHLRNAPTKLMKTLGYGQDYQYDHH
AEGGIALDQTGFPDAMGERVYYNPVPRGMEIKLKEKLDRLREARAQARADKAGKPTA
>Mature_456_residues
SKAKRPDSITPDLLHVDRSAMGPLAERMRPRTLDEMVGQKRLLAPDSALRRAVESGRVHSMILWGPPGCGKTTLALLLAH
YADAEFKAISAVLSGLPDVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA
LLSRCRVHVLEGVSPQDIVEALQRALRDAERGLGAETIQVSEASLLEIASAADGDVRRALTLLEIAAELAAGEGGEITPQ
TLLQVLADRTRRFDKNGEQFYDQISALHKSVRSSNPDAALYWLTRMLDGGCDPAYLARRLTRMAIEDIGLADPRAQSMAL
EAWDIYERLGSPEGELAFAQLVLYLASTAKSNAGYAAFNQAKAEVRATGTQEVPLHLRNAPTKLMKTLGYGQDYQYDHHA
EGGIALDQTGFPDAMGERVYYNPVPRGMEIKLKEKLDRLREARAQARADKAGKPTA

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=413, Percent_Identity=43.0992736077482, Blast_Score=315, Evalue=5e-86,
Organism=Homo sapiens, GI18426904, Length=413, Percent_Identity=38.7409200968523, Blast_Score=259, Evalue=5e-69,
Organism=Homo sapiens, GI6677723, Length=237, Percent_Identity=27.8481012658228, Blast_Score=73, Evalue=7e-13,
Organism=Homo sapiens, GI194306571, Length=236, Percent_Identity=27.5423728813559, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI194306567, Length=236, Percent_Identity=27.5423728813559, Blast_Score=71, Evalue=2e-12,
Organism=Escherichia coli, GI1787119, Length=431, Percent_Identity=52.2041763341067, Blast_Score=446, Evalue=1e-126,
Organism=Saccharomyces cerevisiae, GI6324111, Length=428, Percent_Identity=37.6168224299065, Blast_Score=287, Evalue=2e-78,
Organism=Saccharomyces cerevisiae, GI6324039, Length=214, Percent_Identity=29.9065420560748, Blast_Score=77, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6324478, Length=221, Percent_Identity=26.2443438914027, Blast_Score=63, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 50062; Mature: 49930

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKAKRPDSITPDLLHVDRSAMGPLAERMRPRTLDEMVGQKRLLAPDSALRRAVESGRVH
CCCCCCCCCCCHHHHHHCHHHCCHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHCCCEE
SMILWGPPGCGKTTLALLLAHYADAEFKAISAVLSGLPDVRQVLAEAAQRFAGGRRTVLF
EEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEE
VDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSALLSRCRVHVLEGVSPQDIV
HHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
EALQRALRDAERGLGAETIQVSEASLLEIASAADGDVRRALTLLEIAAELAAGEGGEITP
HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCH
QTLLQVLADRTRRFDKNGEQFYDQISALHKSVRSSNPDAALYWLTRMLDGGCDPAYLARR
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHH
LTRMAIEDIGLADPRAQSMALEAWDIYERLGSPEGELAFAQLVLYLASTAKSNAGYAAFN
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHH
QAKAEVRATGTQEVPLHLRNAPTKLMKTLGYGQDYQYDHHAEGGIALDQTGFPDAMGERV
HHHHHHHHCCCCCCCCHHCCCHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCHHHCCCE
YYNPVPRGMEIKLKEKLDRLREARAQARADKAGKPTA
EECCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SKAKRPDSITPDLLHVDRSAMGPLAERMRPRTLDEMVGQKRLLAPDSALRRAVESGRVH
CCCCCCCCCCHHHHHHCHHHCCHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHCCCEE
SMILWGPPGCGKTTLALLLAHYADAEFKAISAVLSGLPDVRQVLAEAAQRFAGGRRTVLF
EEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEE
VDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSALLSRCRVHVLEGVSPQDIV
HHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
EALQRALRDAERGLGAETIQVSEASLLEIASAADGDVRRALTLLEIAAELAAGEGGEITP
HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCH
QTLLQVLADRTRRFDKNGEQFYDQISALHKSVRSSNPDAALYWLTRMLDGGCDPAYLARR
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHH
LTRMAIEDIGLADPRAQSMALEAWDIYERLGSPEGELAFAQLVLYLASTAKSNAGYAAFN
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHH
QAKAEVRATGTQEVPLHLRNAPTKLMKTLGYGQDYQYDHHAEGGIALDQTGFPDAMGERV
HHHHHHHHCCCCCCCCHHCCCHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCHHHCCCE
YYNPVPRGMEIKLKEKLDRLREARAQARADKAGKPTA
EECCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]