Click here to switch to the map view.

The map label for this gene is clpS [H]

Identifier: 161407969

GI number: 161407969

Start: 1141872

End: 1142168

Strand: Reverse

Name: clpS [H]

Synonym: NATL1_13951

Alternate gene names: 161407969

Gene position: 1142168-1141872 (Counterclockwise)

Preceding gene: 124026103

Following gene: 124026101

Centisome position: 61.25

GC content: 36.7

Gene sequence:

>297_bases
ATGAAATTTTCAACCAATTCAACTACTACAGTCTTAGACCCAAAGACAACAAAAATAAAATATCCAGAAGCAAGGATAAT
AGTGCTTGATGATAATTTTAATACGTTTGAACATGTGGCAAATTGTCTTGTGACAATCATCCCAGGAATGAGTGAAAAAA
GATCATGGGAACTTGCAGTCGAAGTAGATAGGGAAGGTTTAGCGGAAGTATGGAGAGGCCCCTTTGAACAGGCAGAGTTA
TATCATCAGCAACTGATCAGCAAAGGATTAACAATGGCACCAATTGAAAAAACATAA

Upstream 100 bases:

>100_bases
GTATAGGGAGTGGAAAAGGGAAGAATAAAGAGAGCTTTTTGATGCTTAGATCACTGCCTCAATGTTGAAGGATGTTTTGC
AATTAACAGCAGCAACAGCT

Downstream 100 bases:

>100_bases
AATTTCTAATCAATATAGAGCTCTCAGTACAACAAAAAAAAATAAATAGGAAAGCCCTACCTCAACCGAACATCAAGGTG
AGAAATGTTCTTCTTAAATT

Product: ATP-dependent Clp protease adaptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 98; Mature: 98

Protein sequence:

>98_residues
MKFSTNSTTTVLDPKTTKIKYPEARIIVLDDNFNTFEHVANCLVTIIPGMSEKRSWELAVEVDREGLAEVWRGPFEQAEL
YHQQLISKGLTMAPIEKT

Sequences:

>Translated_98_residues
MKFSTNSTTTVLDPKTTKIKYPEARIIVLDDNFNTFEHVANCLVTIIPGMSEKRSWELAVEVDREGLAEVWRGPFEQAEL
YHQQLISKGLTMAPIEKT
>Mature_98_residues
MKFSTNSTTTVLDPKTTKIKYPEARIIVLDDNFNTFEHVANCLVTIIPGMSEKRSWELAVEVDREGLAEVWRGPFEQAEL
YHQQLISKGLTMAPIEKT

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation [H]

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719 [H]

Pfam domain/function: PF02617 ClpS [H]

EC number: NA

Molecular weight: Translated: 11169; Mature: 11169

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFSTNSTTTVLDPKTTKIKYPEARIIVLDDNFNTFEHVANCLVTIIPGMSEKRSWELAV
CCCCCCCCEEEECCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEEE
EVDREGLAEVWRGPFEQAELYHQQLISKGLTMAPIEKT
EECCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKFSTNSTTTVLDPKTTKIKYPEARIIVLDDNFNTFEHVANCLVTIIPGMSEKRSWELAV
CCCCCCCCEEEECCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEEE
EVDREGLAEVWRGPFEQAELYHQQLISKGLTMAPIEKT
EECCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]