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The map label for this gene is holA

Identifier: 16127981

GI number: 16127981

Start: 4003277

End: 4004329

Strand: Direct

Name: holA

Synonym: CC_3751

Alternate gene names: NA

Gene position: 4003277-4004329 (Clockwise)

Preceding gene: 16127980

Following gene: 16127988

Centisome position: 99.66

GC content: 69.14

Gene sequence:

>1053_bases
ATGATCCTGTCCAAGCGTCCGGACGTCGAACGCTTCCTCAAGGAGCCGACCCCGGACATCCGGGCCGTAGTGATCTACGG
CAAGGATCGGGGCGTCGTGCGGGACCGGGCCAATGCGCTGGCCCGGCGCGTGGTCGAGCGCCCGGATGATCCCTTCGATA
CGGCGCAACTGACCGACGGCGATCTCGACGCCGACCCGGCCAAGCTTGAGGACGAACTGTCGGCGATGTCGCTGATGGGG
GGGCGGCGCCTGGTGCGCCTGCGACTGTCCAGCGACAAGGCTGGCCCCGACAAGCAGGCCGCCGAAGCCCTGACCCGCCA
TGTCGAGGGTCAACTCAATCCGGACGCCTTCTTTCTGGTCGAGGCCGGCGCGCTGGGCAGAGACTCACAGCTTCGCAAGG
TCGGCGAGAAGGCCAACGGCTGCGCCGTCATCCCCTGTTACGAGGACGAGGCCGGGGACCTAGCCCGCCTGACGCGCGAC
ACCCTGGCCAACGACAAGGTCAGCGTGAACAGCGAGGCGCTGGAACTCTTCGTTTCGCGCCTACCCAAGGAACGGGGCGT
CGCCCGCGCCGAGATCGAACGGCTGGCCCTCTACCTCGGCCCGGGCAGCGGTATCAACGCCACCGCCGCAGACCTGACCG
ACTTCCTGGGCGTCGAACCCGAGGCCTCCCTTAGTGACGCCGCCGCCGATGCGTTCGGCGGAAAGGTCGGCGCGGCCCAG
CAGGCGCTTCGCCGCGCCGCCGCCGAGGGGGAAGGCGGACCGGCCGCCGTCAGGGCGATGGGCTACTATCTGGGTCGCCT
GCGTCGCGTCCTGACCCTGCACAAGAACGGCGTCGACCTGCAAGCCGCCGCCAAGGCCGCCGGCGTGTTCTGGAAGCAGG
AGCGAGAATTCCTCCGTCAGGCGCGAGCCTGGAACCTGGAGGCCATTCTCGAGATCCAGGGCGAGATCCTGACCGCCGAC
CGAGCCTGCAAGACGTCGGGCTCCCCCGATCAACTGATCGCCGAGCGTCTGGCCCTGATGATCGCCGGCCGCGCCCGCCG
ACTGGGCCTGTAG

Upstream 100 bases:

>100_bases
CGCAGCAGGATGGTCAAGAACGCGCCGCCGCAGAGGCCGCGCGCAAGATTCAGCTGGACCTCGCCACCTGGCTGGCGGGC
AAGAAGCCGGCCTGACCTAG

Downstream 100 bases:

>100_bases
TCGCCGCTCGCCGCCCAGGCGCGGGAAATCAGGGGCTTTGCGGCGCTGTGGATGCTTTTCAGGAAAGCCTTATTACACAA
TCGCTTGCGGCGCATATCTC

Product: DNA polymerase III subunit delta

Products: diphosphate; DNAn+1

Alternate protein names: DNA Polymerase III Delta Subunit

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MILSKRPDVERFLKEPTPDIRAVVIYGKDRGVVRDRANALARRVVERPDDPFDTAQLTDGDLDADPAKLEDELSAMSLMG
GRRLVRLRLSSDKAGPDKQAAEALTRHVEGQLNPDAFFLVEAGALGRDSQLRKVGEKANGCAVIPCYEDEAGDLARLTRD
TLANDKVSVNSEALELFVSRLPKERGVARAEIERLALYLGPGSGINATAADLTDFLGVEPEASLSDAAADAFGGKVGAAQ
QALRRAAAEGEGGPAAVRAMGYYLGRLRRVLTLHKNGVDLQAAAKAAGVFWKQEREFLRQARAWNLEAILEIQGEILTAD
RACKTSGSPDQLIAERLALMIAGRARRLGL

Sequences:

>Translated_350_residues
MILSKRPDVERFLKEPTPDIRAVVIYGKDRGVVRDRANALARRVVERPDDPFDTAQLTDGDLDADPAKLEDELSAMSLMG
GRRLVRLRLSSDKAGPDKQAAEALTRHVEGQLNPDAFFLVEAGALGRDSQLRKVGEKANGCAVIPCYEDEAGDLARLTRD
TLANDKVSVNSEALELFVSRLPKERGVARAEIERLALYLGPGSGINATAADLTDFLGVEPEASLSDAAADAFGGKVGAAQ
QALRRAAAEGEGGPAAVRAMGYYLGRLRRVLTLHKNGVDLQAAAKAAGVFWKQEREFLRQARAWNLEAILEIQGEILTAD
RACKTSGSPDQLIAERLALMIAGRARRLGL
>Mature_350_residues
MILSKRPDVERFLKEPTPDIRAVVIYGKDRGVVRDRANALARRVVERPDDPFDTAQLTDGDLDADPAKLEDELSAMSLMG
GRRLVRLRLSSDKAGPDKQAAEALTRHVEGQLNPDAFFLVEAGALGRDSQLRKVGEKANGCAVIPCYEDEAGDLARLTRD
TLANDKVSVNSEALELFVSRLPKERGVARAEIERLALYLGPGSGINATAADLTDFLGVEPEASLSDAAADAFGGKVGAAQ
QALRRAAAEGEGGPAAVRAMGYYLGRLRRVLTLHKNGVDLQAAAKAAGVFWKQEREFLRQARAWNLEAILEIQGEILTAD
RACKTSGSPDQLIAERLALMIAGRARRLGL

Specific function: Unknown

COG id: COG1466

COG function: function code L; DNA polymerase III, delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 37763; Mature: 37763

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILSKRPDVERFLKEPTPDIRAVVIYGKDRGVVRDRANALARRVVERPDDPFDTAQLTDG
CCCCCCCCHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
DLDADPAKLEDELSAMSLMGGRRLVRLRLSSDKAGPDKQAAEALTRHVEGQLNPDAFFLV
CCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEE
EAGALGRDSQLRKVGEKANGCAVIPCYEDEAGDLARLTRDTLANDKVSVNSEALELFVSR
ECCCCCCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH
LPKERGVARAEIERLALYLGPGSGINATAADLTDFLGVEPEASLSDAAADAFGGKVGAAQ
CCHHCCHHHHHHHHHHEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHH
QALRRAAAEGEGGPAAVRAMGYYLGRLRRVLTLHKNGVDLQAAAKAAGVFWKQEREFLRQ
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
ARAWNLEAILEIQGEILTADRACKTSGSPDQLIAERLALMIAGRARRLGL
HHCCCHHHHEEECCCEEECCHHHCCCCCHHHHHHHHHHHHHHCCHHHCCC
>Mature Secondary Structure
MILSKRPDVERFLKEPTPDIRAVVIYGKDRGVVRDRANALARRVVERPDDPFDTAQLTDG
CCCCCCCCHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
DLDADPAKLEDELSAMSLMGGRRLVRLRLSSDKAGPDKQAAEALTRHVEGQLNPDAFFLV
CCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEE
EAGALGRDSQLRKVGEKANGCAVIPCYEDEAGDLARLTRDTLANDKVSVNSEALELFVSR
ECCCCCCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH
LPKERGVARAEIERLALYLGPGSGINATAADLTDFLGVEPEASLSDAAADAFGGKVGAAQ
CCHHCCHHHHHHHHHHEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHH
QALRRAAAEGEGGPAAVRAMGYYLGRLRRVLTLHKNGVDLQAAAKAAGVFWKQEREFLRQ
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
ARAWNLEAILEIQGEILTADRACKTSGSPDQLIAERLALMIAGRARRLGL
HHCCCHHHHEEECCCEEECCHHHCCCCCHHHHHHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA