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The map label for this gene is phyR [H]

Identifier: 16127707

GI number: 16127707

Start: 3718983

End: 3719783

Strand: Direct

Name: phyR [H]

Synonym: CC_3477

Alternate gene names: 16127707

Gene position: 3718983-3719783 (Clockwise)

Preceding gene: 16127702

Following gene: 16127709

Centisome position: 92.58

GC content: 69.04

Gene sequence:

>801_bases
ATGAGTCTTCTTGCTCGCTTGGCGCCGCATTTGCCTTACATCCGCCGCTACGCCCGGGCCTTGACCGGCGACCAAGCGAC
CGGCGACCACTATGTGCGCGTGGCGCTGGAGGCCCTGGCGGCGGGCGAGCTTGTTCTGGACGCCAACCTGTCGCCTCGCG
TGGCGCTTTACCGGGTTTTCCACGCCATCTGGCTCAGCTCCGGGGCCCAACTGGAAGTGGGTCACGACCAGGGCCTGCAC
GCCGGCGACGACGCCGCCCAGCGCCTGATGCGCATCGCGCCGCGCTCGCGTCAGGCGTTCCTGCTGACGGCCCTGGAAGG
GTTCACGCCCACAGAAGCCGCCCAGATCCTGGACTGCGACTTCGGCGAGGTGGAGCGGCTGATCGGTGACGCCCAGGCCG
AGATCGACGCCGAGCTGGCGACCGAGGTCCTGATCATCGAGGACGAGCCCGTCATCGCCGCCGACATCGAGGCGCTGGTC
CGCGAGCTGGGCCATGACGTCACCGACATCGCCGCTACGCGCGGCGAGGCGCTCGAGGCCGTCACCCGCCGGACGCCGGG
CCTTGTGCTGGCCGACATCCAGCTGGCCGACGGTTCGTCGGGCATCGATGCGGTCAAGGACATCCTGGGGCGCATGGACG
TGCCGGTGATCTTCATTACCGCCTTCCCCGAGCGCCTGCTGACCGGCGAGCGTCCCGAGCCGACCTTCCTGATCACCAAG
CCGTTCCAGCCCGAAACGGTGAAGGCGGCCATCGGTCAGGCGCTGTTCTTCCATCCGCGCCGCACCGCTAAGGCGGCCTG
A

Upstream 100 bases:

>100_bases
CGGAACCGTCGAGTTGAGCGGGCGTTATCGACCTTCGACGGAACGGCGTAGCTTCGCCGTTAGTTAGTAGATCTTCGAAG
ACACAGAATCGGGAGGGGTC

Downstream 100 bases:

>100_bases
GAGCCCTAAGACCGCTCCCCAAGTGGAAACGGCCTCCCGCACGGGAGGCCGTTTTGCGTTGAGATTGCCGCGGGCGCCGT
CGTCAGGTCGTCCCCGCCCT

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MSLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDANLSPRVALYRVFHAIWLSSGAQLEVGHDQGLH
AGDDAAQRLMRIAPRSRQAFLLTALEGFTPTEAAQILDCDFGEVERLIGDAQAEIDAELATEVLIIEDEPVIAADIEALV
RELGHDVTDIAATRGEALEAVTRRTPGLVLADIQLADGSSGIDAVKDILGRMDVPVIFITAFPERLLTGERPEPTFLITK
PFQPETVKAAIGQALFFHPRRTAKAA

Sequences:

>Translated_266_residues
MSLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDANLSPRVALYRVFHAIWLSSGAQLEVGHDQGLH
AGDDAAQRLMRIAPRSRQAFLLTALEGFTPTEAAQILDCDFGEVERLIGDAQAEIDAELATEVLIIEDEPVIAADIEALV
RELGHDVTDIAATRGEALEAVTRRTPGLVLADIQLADGSSGIDAVKDILGRMDVPVIFITAFPERLLTGERPEPTFLITK
PFQPETVKAAIGQALFFHPRRTAKAA
>Mature_265_residues
SLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDANLSPRVALYRVFHAIWLSSGAQLEVGHDQGLHA
GDDAAQRLMRIAPRSRQAFLLTALEGFTPTEAAQILDCDFGEVERLIGDAQAEIDAELATEVLIIEDEPVIAADIEALVR
ELGHDVTDIAATRGEALEAVTRRTPGLVLADIQLADGSSGIDAVKDILGRMDVPVIFITAFPERLLTGERPEPTFLITKP
FQPETVKAAIGQALFFHPRRTAKAA

Specific function: Key regulator for adaptation to epiphytic life (leaf colonizing) of the bacterium. Positively regulates several genes including katE, sodA, hsp20, dps and gloA. However it is not known whether this regulation is direct or indirect. Also induces several de

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR014605
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28798; Mature: 28667

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDANLSPRVALYRVF
CCHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHH
HAIWLSSGAQLEVGHDQGLHAGDDAAQRLMRIAPRSRQAFLLTALEGFTPTEAAQILDCD
HHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHCCCCCHHHHHHHCCC
FGEVERLIGDAQAEIDAELATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEA
HHHHHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
VTRRTPGLVLADIQLADGSSGIDAVKDILGRMDVPVIFITAFPERLLTGERPEPTFLITK
HHHCCCCEEEEEEEECCCCCCHHHHHHHHCCCCCCEEEEEECCHHHHCCCCCCCCEEEEC
PFQPETVKAAIGQALFFHPRRTAKAA
CCCCHHHHHHHHHHHHCCCCHHCCCC
>Mature Secondary Structure 
SLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDANLSPRVALYRVF
CHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHH
HAIWLSSGAQLEVGHDQGLHAGDDAAQRLMRIAPRSRQAFLLTALEGFTPTEAAQILDCD
HHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHCCCCCHHHHHHHCCC
FGEVERLIGDAQAEIDAELATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEA
HHHHHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
VTRRTPGLVLADIQLADGSSGIDAVKDILGRMDVPVIFITAFPERLLTGERPEPTFLITK
HHHCCCCEEEEEEEECCCCCCHHHHHHHHCCCCCCEEEEEECCHHHHCCCCCCCCEEEEC
PFQPETVKAAIGQALFFHPRRTAKAA
CCCCHHHHHHHHHHHHCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA