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The map label for this gene is rpoE [C]

Identifier: 16127540

GI number: 16127540

Start: 3559347

End: 3559847

Strand: Direct

Name: rpoE [C]

Synonym: CC_3310

Alternate gene names: 16127540

Gene position: 3559347-3559847 (Clockwise)

Preceding gene: 16127527

Following gene: 16127541

Centisome position: 88.61

GC content: 70.46

Gene sequence:

>501_bases
TTGAGCCGAGACCACGACAACTTCGCCGACTGGCTGGCGCCGCATCTGCCGATGCTGCACCGGACGGCGCGGGCGTTCGC
GGAGGCGCCGGATCAGCACGACCTGCTGCAAGAGCTGACCGTGGCGCTGTGGCGGGCGCGCCCCAGCTTTCGCGCGGAGA
GCGCGGCCGGGACCTTCGCCCACCGCGTGGCCCACAACGCCGCCCTGACCTGGAAGCGAGGCGAGGTCCGCCGGCGACTG
CGCGGCGTGGTGGTCGAGGGGGAGCTTCTGACGCGCGACGCCGGGACTGATCCGCAAGGCGCTCTGCTGGAACGGCTCTA
CGCCGCGATCCGCCAGCTACCGCCGGTCGAGCGCTCGTTGATCCTGCTGTCGCTGGACGGGGTCGGCTATGCCGAGATCG
CCCGCCTGCACGGCCTGTCAGAAACCAATGTCGGGGCGCGTCTGACCAGAATCCGCCAGCGCGTCTCCAGCCTCGTGGAG
GGATCCGACGATGGAGTTTGA

Upstream 100 bases:

>100_bases
GGACATGGAGGCAGGCTAACAAGCGTTTGAAAAAAGGAAAGCCTTCCGTAAGGACGCGGGTCTGGCCGGCATCTAACCTC
TCGAACACGGGGGGGATGGG

Downstream 100 bases:

>100_bases
AACCCTGCAAGCCGCCTGGCGCTCTCCGGCCAACACGCCGGACGACAAGGCTCAGGCCTATCTGATGGAGGAACTGATGC
ACATGCTGAAGGCGCGCCGC

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Factor; RNA Polymerase Ecf-Type Sigma Factor

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MSRDHDNFADWLAPHLPMLHRTARAFAEAPDQHDLLQELTVALWRARPSFRAESAAGTFAHRVAHNAALTWKRGEVRRRL
RGVVVEGELLTRDAGTDPQGALLERLYAAIRQLPPVERSLILLSLDGVGYAEIARLHGLSETNVGARLTRIRQRVSSLVE
GSDDGV

Sequences:

>Translated_166_residues
MSRDHDNFADWLAPHLPMLHRTARAFAEAPDQHDLLQELTVALWRARPSFRAESAAGTFAHRVAHNAALTWKRGEVRRRL
RGVVVEGELLTRDAGTDPQGALLERLYAAIRQLPPVERSLILLSLDGVGYAEIARLHGLSETNVGARLTRIRQRVSSLVE
GSDDGV
>Mature_165_residues
SRDHDNFADWLAPHLPMLHRTARAFAEAPDQHDLLQELTVALWRARPSFRAESAAGTFAHRVAHNAALTWKRGEVRRRLR
GVVVEGELLTRDAGTDPQGALLERLYAAIRQLPPVERSLILLSLDGVGYAEIARLHGLSETNVGARLTRIRQRVSSLVEG
SDDGV

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18442; Mature: 18311

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRDHDNFADWLAPHLPMLHRTARAFAEAPDQHDLLQELTVALWRARPSFRAESAAGTFA
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
HRVAHNAALTWKRGEVRRRLRGVVVEGELLTRDAGTDPQGALLERLYAAIRQLPPVERSL
HHHHHHHHHCCCHHHHHHHHHCCCCCCHHEECCCCCCCHHHHHHHHHHHHHHCCCCCCEE
ILLSLDGVGYAEIARLHGLSETNVGARLTRIRQRVSSLVEGSDDGV
EEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SRDHDNFADWLAPHLPMLHRTARAFAEAPDQHDLLQELTVALWRARPSFRAESAAGTFA
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
HRVAHNAALTWKRGEVRRRLRGVVVEGELLTRDAGTDPQGALLERLYAAIRQLPPVERSL
HHHHHHHHHCCCHHHHHHHHHCCCCCCHHEECCCCCCCHHHHHHHHHHHHHHCCCCCCEE
ILLSLDGVGYAEIARLHGLSETNVGARLTRIRQRVSSLVEGSDDGV
EEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA