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The map label for this gene is betI [H]

Identifier: 16127353

GI number: 16127353

Start: 3360063

End: 3360671

Strand: Direct

Name: betI [H]

Synonym: CC_3123

Alternate gene names: 16127353

Gene position: 3360063-3360671 (Clockwise)

Preceding gene: 16127352

Following gene: 16127361

Centisome position: 83.65

GC content: 71.92

Gene sequence:

>609_bases
TTGTTTGGCAAGGCGCTCACCGCCATGACCCGCGCCGCCTTCACGCGCGAGGCGCCCGATGTCCGCAGGCAGGCTTTGGT
CGCCGCCGCCGAGGCGGTGTTGGCGCGCGAGGGCGTGGGTGGGACCAGCGTGCGCGCTATCTGCGCCGAGGCCGGGGTCT
CGCCGGGCCTGTTGCGGCACTATTTCGAGGGCGTCGATGATCTGATCGCGGCGGCCTATGAGGCGGTGTCACAGCGGATC
GACGGCGCGCTGGACGCGGCGCTGGCGGCGGCGGGGGATGATCCCCGCGCGCGGCTGCTGGCCTATCTGGGCGCCAGTTT
CGCGCCGCCGGTGCTGGACCAGCGGCTGCTGGCGGCCTGGGTCGGGTTCTGGTCGCTGGTCAGGACTAAGCCGCGCATGG
CGGCGATCCATGCCGCTTCGTACGCGGACTTCCGTGCGCGGCTGGAGGTCTTGCTGGCAAAGGCCGGCGCGCGTGACACG
CGCCTGGCGGCCATCGCCCTGACGGCGAGCGTGGACGGACTGTGGCTGGAACTGTGCCTGGATCCTGCGACCTTCAGTCC
GGACGAGGCGCGCGCGATCGTGACCCGCGCGCTCGACGGCTGGCTCTAA

Upstream 100 bases:

>100_bases
CCGTAGCGCAGCGGAGAGCCGGGACCCAGGGGGTGAGGAACCGCCGGGGAAGCCGCCCCTGGGTCCCGGATAGCGCTTCG
CGCTTCCGGGATGACACGGC

Downstream 100 bases:

>100_bases
GTGGTTGATTTTAAAGTTTTTTATCTGGTTTAGATGGTTCCCTCTAAACCAGACAGGCTCTAGGCGACGGCGACCTGGTT
GGCCGCGCGGTTGCGGCCCC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MFGKALTAMTRAAFTREAPDVRRQALVAAAEAVLAREGVGGTSVRAICAEAGVSPGLLRHYFEGVDDLIAAAYEAVSQRI
DGALDAALAAAGDDPRARLLAYLGASFAPPVLDQRLLAAWVGFWSLVRTKPRMAAIHAASYADFRARLEVLLAKAGARDT
RLAAIALTASVDGLWLELCLDPATFSPDEARAIVTRALDGWL

Sequences:

>Translated_202_residues
MFGKALTAMTRAAFTREAPDVRRQALVAAAEAVLAREGVGGTSVRAICAEAGVSPGLLRHYFEGVDDLIAAAYEAVSQRI
DGALDAALAAAGDDPRARLLAYLGASFAPPVLDQRLLAAWVGFWSLVRTKPRMAAIHAASYADFRARLEVLLAKAGARDT
RLAAIALTASVDGLWLELCLDPATFSPDEARAIVTRALDGWL
>Mature_202_residues
MFGKALTAMTRAAFTREAPDVRRQALVAAAEAVLAREGVGGTSVRAICAEAGVSPGLLRHYFEGVDDLIAAAYEAVSQRI
DGALDAALAAAGDDPRARLLAYLGASFAPPVLDQRLLAAWVGFWSLVRTKPRMAAIHAASYADFRARLEVLLAKAGARDT
RLAAIALTASVDGLWLELCLDPATFSPDEARAIVTRALDGWL

Specific function: Repressor involved in choline regulation of the bet genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR017757
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21362; Mature: 21362

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGKALTAMTRAAFTREAPDVRRQALVAAAEAVLAREGVGGTSVRAICAEAGVSPGLLRH
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHH
YFEGVDDLIAAAYEAVSQRIDGALDAALAAAGDDPRARLLAYLGASFAPPVLDQRLLAAW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHH
VGFWSLVRTKPRMAAIHAASYADFRARLEVLLAKAGARDTRLAAIALTASVDGLWLELCL
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHEECCCCHHHHEEEE
DPATFSPDEARAIVTRALDGWL
CCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFGKALTAMTRAAFTREAPDVRRQALVAAAEAVLAREGVGGTSVRAICAEAGVSPGLLRH
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHH
YFEGVDDLIAAAYEAVSQRIDGALDAALAAAGDDPRARLLAYLGASFAPPVLDQRLLAAW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHH
VGFWSLVRTKPRMAAIHAASYADFRARLEVLLAKAGARDTRLAAIALTASVDGLWLELCL
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHEECCCCHHHHEEEE
DPATFSPDEARAIVTRALDGWL
CCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA