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The map label for this gene is ydcR [C]

Identifier: 16127346

GI number: 16127346

Start: 3350248

End: 3351594

Strand: Direct

Name: ydcR [C]

Synonym: CC_3116

Alternate gene names: 16127346

Gene position: 3350248-3351594 (Clockwise)

Preceding gene: 16127342

Following gene: 16127349

Centisome position: 83.4

GC content: 73.42

Gene sequence:

>1347_bases
ATGCCCGCAACTAAGGGATCGCCGAATCCAGCCGCCGCGTGGCTGCGGCGCGTGGAGGCGTTCGATGGCCCGGCCTATCG
CCGGATCGCCCTGGCGCTGGAGGCGGCGGTCGCCGAAGGTGAATTGCAGGCCGGCGACCAAATCCCAGCACAGCGCGAGG
TCGCGCGGCTGATCGGCGTGGATTTCACCACCGTGACCCGCGCCTACGGCCTGGCCCGCGAGCGCGGCCTGATCGAAGGA
ACCGCCGGTCGCGGCACATTTATTCGTCTACGGATCAATGAAGACGAGGCCGGCCTCATCGACCTCTCGATGAACCTGCC
GCCGCCCCCGCAGGGCCTGAATCTGGCGGGTCTTCTGCAGGACGCCACCCGCGCCATCCTGGCGCGCACCGAACCGGCCA
CACTGATGGCCTATCACCCGGGAGCCGGCTCGCTGGCCCAGCGCAGCGCGGGCGCGGCGTGGCTGGCGCCGACCCTGGGC
CCGGTCGATCCGGGGCGCGTGGTGGTGACGGGCGGCGCCCAGACCGCCCTGTCGGCCCTGCTGGATTACCTGGCCGCGCC
CGGCGATACGATCATCGTCGAGGCCTTCACCTATCCGGGCCTGCTGGCGACCGCGCGGCGGCGAGGCCTGACCTTGGTGG
CCTGCCCGCTCGACGACGAAGGCCTGCAGCCCGAGGCGCTGGCGCAGCTTGTGGCGCAGCATGGCCCGCGCCTGATCTGC
TGCACTCCGACCTTCCAGAACCCGACCGCCGCCACGATGAGCCCAGCGCGTCGCGCCGCCGTGATCGAGATCGCGCGGGC
GGCCGGCGTGACCATCCTCGAGGACGACGCCTATGGGCTGTTGCCGGCCTCGCCCGCGCCCGCCCTGGCCGCGCTGTGGC
CCGAAGGGGTCTACCACGTGGCCACCACCGCCAAGGCGCTCTCGCCCGGCCTGCGCCTGGCCTATGTCGTAGCCCCGCCC
GGCTGCGCCGAGGGCTTCGCCCAGGCGCTGCATGCGATCGCCCAGATGCCGGCGCCGCTGATGGCGGGGATCGTCACCCA
ATGGATCCGCGACGGCGTGGCGGCCAAGGTTCTGGCGGGCGTGCGGTCCGAGGCCGTCGCGCGCCGGGCCCTGGCGGCGA
CCCTGCTGCCGCGCGCGGTCGGCGACGCCGAAAGTCTGCATGTCTGGCTGGCGGGCGCGGAAGCGCCGCCGGCGGCGCGC
GAGCGGGGCCTGGCGCTGGTGGGGGCGAACGCGTTTCGGGCGCCCGGCGTTACGGGCGAAGGCCTGCGAATATCCTTGGG
CGCGACGGCCAAGCGCGCCGCGTTGACGCAGGGTTTGAAGGCGCTCGCGACGCTGAGCGCCCCCTAG

Upstream 100 bases:

>100_bases
GGTCGGAGCGTTGGGATAGCTGGCGTCGGCCATGAAAAGCCCTTCCTACAATCGCACGATTGATCCATACATTACGCGCT
CAATGTATGGATATGCCGTC

Downstream 100 bases:

>100_bases
AAGCCGTCGTCGTCCTCGGCCTCAGCCCCGTCCGCCTCGCCGCCCATGGCGTTCTCGAGGCTGTCGATGATGTCGTCCAT
CTGGTCGGGCGTGATCGAGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 447

Protein sequence:

>448_residues
MPATKGSPNPAAAWLRRVEAFDGPAYRRIALALEAAVAEGELQAGDQIPAQREVARLIGVDFTTVTRAYGLARERGLIEG
TAGRGTFIRLRINEDEAGLIDLSMNLPPPPQGLNLAGLLQDATRAILARTEPATLMAYHPGAGSLAQRSAGAAWLAPTLG
PVDPGRVVVTGGAQTALSALLDYLAAPGDTIIVEAFTYPGLLATARRRGLTLVACPLDDEGLQPEALAQLVAQHGPRLIC
CTPTFQNPTAATMSPARRAAVIEIARAAGVTILEDDAYGLLPASPAPALAALWPEGVYHVATTAKALSPGLRLAYVVAPP
GCAEGFAQALHAIAQMPAPLMAGIVTQWIRDGVAAKVLAGVRSEAVARRALAATLLPRAVGDAESLHVWLAGAEAPPAAR
ERGLALVGANAFRAPGVTGEGLRISLGATAKRAALTQGLKALATLSAP

Sequences:

>Translated_448_residues
MPATKGSPNPAAAWLRRVEAFDGPAYRRIALALEAAVAEGELQAGDQIPAQREVARLIGVDFTTVTRAYGLARERGLIEG
TAGRGTFIRLRINEDEAGLIDLSMNLPPPPQGLNLAGLLQDATRAILARTEPATLMAYHPGAGSLAQRSAGAAWLAPTLG
PVDPGRVVVTGGAQTALSALLDYLAAPGDTIIVEAFTYPGLLATARRRGLTLVACPLDDEGLQPEALAQLVAQHGPRLIC
CTPTFQNPTAATMSPARRAAVIEIARAAGVTILEDDAYGLLPASPAPALAALWPEGVYHVATTAKALSPGLRLAYVVAPP
GCAEGFAQALHAIAQMPAPLMAGIVTQWIRDGVAAKVLAGVRSEAVARRALAATLLPRAVGDAESLHVWLAGAEAPPAAR
ERGLALVGANAFRAPGVTGEGLRISLGATAKRAALTQGLKALATLSAP
>Mature_447_residues
PATKGSPNPAAAWLRRVEAFDGPAYRRIALALEAAVAEGELQAGDQIPAQREVARLIGVDFTTVTRAYGLARERGLIEGT
AGRGTFIRLRINEDEAGLIDLSMNLPPPPQGLNLAGLLQDATRAILARTEPATLMAYHPGAGSLAQRSAGAAWLAPTLGP
VDPGRVVVTGGAQTALSALLDYLAAPGDTIIVEAFTYPGLLATARRRGLTLVACPLDDEGLQPEALAQLVAQHGPRLICC
TPTFQNPTAATMSPARRAAVIEIARAAGVTILEDDAYGLLPASPAPALAALWPEGVYHVATTAKALSPGLRLAYVVAPPG
CAEGFAQALHAIAQMPAPLMAGIVTQWIRDGVAAKVLAGVRSEAVARRALAATLLPRAVGDAESLHVWLAGAEAPPAARE
RGLALVGANAFRAPGVTGEGLRISLGATAKRAALTQGLKALATLSAP

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=219, Percent_Identity=22.8310502283105, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI33469970, Length=219, Percent_Identity=22.8310502283105, Blast_Score=80, Evalue=3e-15,
Organism=Escherichia coli, GI1787710, Length=327, Percent_Identity=28.7461773700306, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790797, Length=347, Percent_Identity=24.4956772334294, Blast_Score=91, Evalue=1e-19,
Organism=Saccharomyces cerevisiae, GI6321236, Length=256, Percent_Identity=25, Blast_Score=82, Evalue=3e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 46067; Mature: 45935

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPATKGSPNPAAAWLRRVEAFDGPAYRRIALALEAAVAEGELQAGDQIPAQREVARLIGV
CCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
DFTTVTRAYGLARERGLIEGTAGRGTFIRLRINEDEAGLIDLSMNLPPPPQGLNLAGLLQ
CHHHHHHHHHHHHHCCCEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCHHHHHH
DATRAILARTEPATLMAYHPGAGSLAQRSAGAAWLAPTLGPVDPGRVVVTGGAQTALSAL
HHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCEEECCCCCCCCCCCEEEECCHHHHHHHH
LDYLAAPGDTIIVEAFTYPGLLATARRRGLTLVACPLDDEGLQPEALAQLVAQHGPRLIC
HHHHHCCCCEEEEEEECCCCHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCCEEEE
CTPTFQNPTAATMSPARRAAVIEIARAAGVTILEDDAYGLLPASPAPALAALWPEGVYHV
ECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHCCCCHHHH
ATTAKALSPGLRLAYVVAPPGCAEGFAQALHAIAQMPAPLMAGIVTQWIRDGVAAKVLAG
HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHH
VRSEAVARRALAATLLPRAVGDAESLHVWLAGAEAPPAARERGLALVGANAFRAPGVTGE
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHCCEEEEECCCCCCCCCCCC
GLRISLGATAKRAALTQGLKALATLSAP
CEEEEECCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PATKGSPNPAAAWLRRVEAFDGPAYRRIALALEAAVAEGELQAGDQIPAQREVARLIGV
CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
DFTTVTRAYGLARERGLIEGTAGRGTFIRLRINEDEAGLIDLSMNLPPPPQGLNLAGLLQ
CHHHHHHHHHHHHHCCCEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCHHHHHH
DATRAILARTEPATLMAYHPGAGSLAQRSAGAAWLAPTLGPVDPGRVVVTGGAQTALSAL
HHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCEEECCCCCCCCCCCEEEECCHHHHHHHH
LDYLAAPGDTIIVEAFTYPGLLATARRRGLTLVACPLDDEGLQPEALAQLVAQHGPRLIC
HHHHHCCCCEEEEEEECCCCHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCCEEEE
CTPTFQNPTAATMSPARRAAVIEIARAAGVTILEDDAYGLLPASPAPALAALWPEGVYHV
ECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHCCCCHHHH
ATTAKALSPGLRLAYVVAPPGCAEGFAQALHAIAQMPAPLMAGIVTQWIRDGVAAKVLAG
HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHH
VRSEAVARRALAATLLPRAVGDAESLHVWLAGAEAPPAARERGLALVGANAFRAPGVTGE
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHCCEEEEECCCCCCCCCCCC
GLRISLGATAKRAALTQGLKALATLSAP
CEEEEECCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]